ViewGene
Locus Name:
GeneID:
Location:

GeneID:2170
TrivialName: PA14_33080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33080
PAO1 Ortholog Locus:PA2438
Sequence Length:1014
Protein Length:337
Start: 2897623
Stop: 2898636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05826.1|AE004671_2 (AE004671) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 335/341 (98%), Positives = 336/341 (98%), Gaps = 4/341 (1%)
Sequence:
TTGAGCCTCGGTCACTCCCACTCGCACAGCCACCACGAGCATCATCACGATCACGATCACGGCCATGGCGCA
CAGGCCGCGCCGCCCTGGCGCCGGCTGCTGGTCGCCGCGCTGCTGGTGCTGTTCGCCGTCGCCGCCGCTTGC
CTGGTGCAGGTGCGTTCCGGCGAGGCGATGGTCATCACCCGTTTCGGCAACCCGGCGCGGGTCCTGCTCGAA
CCGGGCCTGGCCTGGCGCCTGCCGTTGCCGTTCGAGAGCGCGATCCCGGTCGACCTGCGCCTGCGCACCACC
TCCAGCGGCCTGCAGGACGTCGGCACCCGCGATGGCCTGCGGATCATCGTCCAGGCCTACGTGGCCTGGCAG
GTCCAGGGCGACGCCGACAACGTGCAGCGCTTCATGCGCGCGGTGCGCAACCAGCCGGACGAGGCTGCCCGG
CAGTTGCGCACCTTCGTCGGCTCGGCGCTGGAAACCACCGCCAGCGCCTATGACCTGGCCGACCTGGTGAAT
ACCGAGGCGTCGCGGGTGCGTATCGGCGACTTCGAAGCGCGCCTGCGCGAACAGATCGACAATCAGTTGCTG
GCGACCTACGGGGTCAAGGTGGTGCAGGTCGGCATCGAGCGCCTGACCCTGCCCAAGGTGACCCTCGGCGCC
ACCGTCGACCGCATGCGCGCCGAGCGCGAGACCATCGCCACCGAGCGTACCGCCGAGGGCCGTCGCCAGGCC
GCGGAGATCCGTTCGGCGGCGGAGCGCGACGCCCGGGTGATCCAGGCCGAGGCTTCGGTGAAAGCCGCGGAG
ATCGAGGCCCAGGCGCGGGTCGAGGCGGCGCGCATCTACGGCAAGGCCTACGCCGGTTCGCCGCAGCTGTAC
AACCTGCTGCGCTCGCTGGACACCCTCGGCACCATCGTCAACGGCGATACCCGCCTGGTCTTGCGCACCGAT
GCCGCACCGTTCCGCGTGCTGGTCGACGGGCCGCCGGCGCTCCCCGCCGAAGCGCCGGCCAACGGGCGCCGG
CCATGA
Translation:
MSLGHSHSHSHHEHHHDHDHGHGAQAAPPWRRLLVAALLVLFAVAAACLVQVRSGEAMVITRFGNPARVLLE
PGLAWRLPLPFESAIPVDLRLRTTSSGLQDVGTRDGLRIIVQAYVAWQVQGDADNVQRFMRAVRNQPDEAAR
QLRTFVGSALETTASAYDLADLVNTEASRVRIGDFEARLREQIDNQLLATYGVKVVQVGIERLTLPKVTLGA
TVDRMRAERETIATERTAEGRRQAAEIRSAAERDARVIQAEASVKAAEIEAQARVEAARIYGKAYAGSPQLY
NLLRSLDTLGTIVNGDTRLVLRTDAAPFRVLVDGPPALPAEAPANGRRP*
AnnotationID:2178GeneID:2170
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2438
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21489




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2170
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3712
                           PA2438_tr
                           translation of PA2438
                           341
                           98.24
                           98.53
                           4
                           1669.0
     

     
     
114440
                           gb|AAG05826.1|AE004671_2
                           (AE004671) hypothetical protein PA2438 [Pseudomonas aeruginosa PAO1]
                           341
                           97.94
                           98.53
                           4
                           1667.0
     

     
     
114441
                           gb|AAO58953.1|
                           (AE016876) SPFH domain / Band 7 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           348
                           74.71
                           85.05
                           14
                           1298.0
     

     






      

          
GC ORFID: 45172How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2438Glimmer Score: 

          
Start: 2056293Stop: 2055280

          
Length: 1014


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2438 translation of PA2438Homolog Bit Score 646.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4160 (ORF: BLASTX 507.0), t_PA2438 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGCCTCGGTCACTCCCACTCGCACAGCCACCACGAGCATCATCACGATCACGATCACGGCCATGGCGCA 
CAGGCCGCGCCGCCCTGGCGCCGGCTGCTGGTCGCCGCGCTGCTGGTGCTGTTCGCCGTCGCCGCCGCTTGC 
CTGGTGCAGGTGCGTTCCGGCGAGGCGATGGTCATCACCCGTTTCGGCAACCCGGCGCGGGTCCTGCTCGAA 
CCGGGCCTGGCCTGGCGCCTGCCGTTGCCGTTCGAGAGCGCGATCCCGGTCGACCTGCGCCTGCGCACCACC 
TCCAGCGGCCTGCAGGACGTCGGCACCCGCGATGGCCTGCGGATCATCGTCCAGGCCTACGTGGCCTGGCAG 
GTCCAGGGCGACGCCGACAACGTGCAGCGCTTCATGCGCGCGGTGCGCAACCAGCCGGACGAGGCTGCCCGG 
CAGTTGCGCACCTTCGTCGGCTCGGCGCTGGAAACCACCGCCAGCGCCTATGACCTGGCCGACCTGGTGAAT 
ACCGAGGCGTCGCGGGTGCGTATCGGCGACTTCGAAGCGCGCCTGCGCGAACAGATCGACAATCAGTTGCTG 
GCGACCTACGGGGTCAAGGTGGTGCAGGTCGGCATCGAGCGCCTGACCCTGCCCAAGGTGACCCTCGGCGCC 
ACCGTCGACCGCATGCGCGCCGAGCGCGAGACCATCGCCACCGAGCGTACCGCCGAGGGCCGTCGCCAGGCC 
GCGGAGATCCGTTCGGCGGCGGAGCGCGACGCCCGGGTGATCCAGGCCGAGGCTTCGGTGAAAGCCGCGGAG 
ATCGAGGCCCAGGCGCGGGTCGAGGCGGCGCGCATCTACGGCAAGGCCTACGCCGGTTCGCCGCAGCTGTAC 
AACCTGCTGCGCTCGCTGGACACCCTCGGCACCATCGTCAACGGCGATACCCGCCTGGTCTTGCGCACCGAT 
GCCGCACCGTTCCGCGTGCTGGTCGACGGGCCGCCGGCGCTCCCCGCCGAAGCGCCGGCCAACGGGCGCCGG 
CCATGA