ViewGene
Locus Name:
GeneID:
Location:

GeneID:217
TrivialName: PA14_13170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13170
PAO1 Ortholog Locus:PA3920
Sequence Length:2379
Protein Length:792
Start: 1135031
Stop: 1132653
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07307.1|AE004809_7 (AE004809) probable metal transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
Identities = 790/792 (99%), Positives = 791/792 (99%)
Sequence:
ATGAACAGCGCCACGCTAACCGAGCTCGATCTGCCGGTCAGCGGCATGACTTGCGCGTCCTGCGCCGGCCGT
GTCGAACGAGCCCTGAAGAAAGTGCCCGGGGTCGCGGCCGCCTCGGTCAACCTGGCCAGCGAGCAGGCCCGC
GTACAGGCCCCGGCGGACAGCCTGCCGGCCCTGGTGGCGGCGGTCGAGCAGGCCGGCTACCAGGTTCCGGCG
CGCAGCCTGGAACTGTCCATCGAGGGCATGACCTGCGCCAGTTGCGTCGGCCGGGTCGAGCGGGCGCTGAAG
AAGGTGCCCGGCGTACGCGAGGTCAGCGTCAACCTGGCCAGCGAGCGCGCCCACCTCGACCTGCTCGGCGCC
GTGGACAGCCAGGCCTTGCTGCAGGCGGTGGAACAGGCCGGCTACAAGGCCCGCCTGCTCGACGCGGGGCAA
CCACGCCAGGACGATGCCGAGCGCCGCCTGCGCCGCGAACGCTGGTGGGTGATCGCCGCGCTGTTGCTGGCG
TTGCCGCTGGTGCTGCCGATGCTGGTGGAATGGGCCGGCCTGCACTGGATGCTGCCGCCGTGGGCGCAGTTC
CTCCTGGCGACCCCGGTGCAGTTCGTCATCGGCGCGCGCTTCTATGTCTCCGCCTGGCGCGCGGTGAAAGCC
GGTGCCGGCAACATGGACCTGCTGGTCGCCCTCGGCACCAGCGCCGGCTACGGCCTCAGCGTCTACCTCTGG
CTGACCGCCCCGCCCGGCCACATGCCGCACCTCTACTTCGAAGCCTCGACCGTGGTGATCGCCCTGATCCTC
CTCGGCAAGTACCTGGAAAGCCGCGCCAAGCGCCAGACCGCCAGCGCCATCCGCGCCCTCGAGGCGTTGCGC
CCGGAGCGCGCGGTGCGCCTGCGCGACGGTCGCGAGGAAGAGGTGGCGATCGCCGAGTTGCGCCTCGGCGAC
GAGGTGGTGGTGCGTCCCGGCGAACGCTTCCCGGTGGACGGCGAGGTGCTCGACGGCAGCAGCCACGCCGAC
GAGGCGCTGATCACCGGCGAGAGCCTGCCGGTGCCCAAGGCTCCCGGCGACAAGGTCACCGGCGGCGCGATC
AACGGCGAAGGCCGCCTGCTCCTGCGCACCACCGCGCTCGGCGGGGAAACGGTGCTGGCGAAGATCATCCGC
CTGGTGGAAGACGCCCAGGCCGCCAAGGCGCCGATCCAGAAGCTGGTGGACAAGGTCAGCCAGGTCTTCGTC
CCGGTGGTGATCCTCATCGCACTGGTCACCCTCGGCGCCTGGCTGGTCGCCGGGGTCGGCCTGGAGCAGGCC
CTGGTGAACGCCGTGGCGGTGCTGGTGATCGCCTGCCCCTGCGCCCTCGGCCTGGCCACCCCGACCGCGATC
ATGGCCGGCACCGGCGTGGCCGCACGCCACGGCATCCTGATCAAGGACGCCGAGTCCCTGGAAGTCGCCCAT
GCGGTCACCAGCGTGGCCTTCGACAAGACCGGCACCCTGACCTCCGGGCGACCGCAGATCATCCACCTCGGC
GGCGACGATCAGGAGCAACTGCTCAGGCTCGCCGGCGCCCTGCAACGCGGCAGCGAGCACCCGCTGGCCAAG
GCCGTGCTCGAGCGCTGCGCCGAGCGCGACCTGGAGGTTCCGCCGGTGAACGCCAGCCAGGCCCTCAGCGGT
CGCGGCATCCAGGGCGAGGTCGAGGGTCGCCGGCTGGCCCTAGGCAACCGCCGCCTGCTCGACGAGCAGGAA
CTCAAGCCCGGCGCGCTGGCGAGTGCCGCCGCGGACTGGGAGGCCGAGGGCCGCACCCTGTCCTGGCTGCTG
GAACTGGCTCCGGAGAAACGCGTGCTCGGCCTGTTCGCCTTCGGCGACAGCCTCAAGGACGGCGCCGCCGAA
GCGGTGGAGGCCCTGCGCGAACGGGATATCCACAGCCACCTGATCACCGGCGACAACCGCGGCAGCGCGGCG
GTGGTGGCCAAGGCCCTGGGCATCGACGACGTACACGCGGAAGTGCTGCCGGCGGACAAGGCCGCCACGGTC
GCCGAGCTGAAAGGCCGGGGCCGGGTGGTGGCGATGGTCGGCGACGGCATCAACGACGCCCCGGCGCTGGCC
GCCGCAGACGTCGGCATCGCCATGGGTGGCGGCACCGACGTGGCCATGCACGCCGCCGGCATCACCCTGATG
CGCGGCGACCCGCGCCTGGTGCCGGCGGCGCTGGACATCTCGCGGCGGACCTACGCGAAGATCCGCCAGAAC
CTGTTCTGGGCCTTCATCTACAACGTGATCGGCATCCCGCTGGCGGCCTTCGGCCTGCTCAACCCGATGGTG
GCGGGCGCGGCGATGGCCTTCTCCAGCGTCAGCGTGGTCGGCAACGCCCTGCTCCTGCGACGCTGGAAGCCC
TGA
Translation:
MNSATLTELDLPVSGMTCASCAGRVERALKKVPGVAAASVNLASEQARVQAPADSLPALVAAVEQAGYQVPA
RSLELSIEGMTCASCVGRVERALKKVPGVREVSVNLASERAHLDLLGAVDSQALLQAVEQAGYKARLLDAGQ
PRQDDAERRLRRERWWVIAALLLALPLVLPMLVEWAGLHWMLPPWAQFLLATPVQFVIGARFYVSAWRAVKA
GAGNMDLLVALGTSAGYGLSVYLWLTAPPGHMPHLYFEASTVVIALILLGKYLESRAKRQTASAIRALEALR
PERAVRLRDGREEEVAIAELRLGDEVVVRPGERFPVDGEVLDGSSHADEALITGESLPVPKAPGDKVTGGAI
NGEGRLLLRTTALGGETVLAKIIRLVEDAQAAKAPIQKLVDKVSQVFVPVVILIALVTLGAWLVAGVGLEQA
LVNAVAVLVIACPCALGLATPTAIMAGTGVAARHGILIKDAESLEVAHAVTSVAFDKTGTLTSGRPQIIHLG
GDDQEQLLRLAGALQRGSEHPLAKAVLERCAERDLEVPPVNASQALSGRGIQGEVEGRRLALGNRRLLDEQE
LKPGALASAAADWEAEGRTLSWLLELAPEKRVLGLFAFGDSLKDGAAEAVEALRERDIHSHLITGDNRGSAA
VVAKALGIDDVHAEVLPADKAATVAELKGRGRVVAMVGDGINDAPALAAADVGIAMGGGTDVAMHAAGITLM
RGDPRLVPAALDISRRTYAKIRQNLFWAFIYNVIGIPLAAFGLLNPMVAGAAMAFSSVSVVGNALLLRRWKP
*
AnnotationID:227GeneID:217
AnnotatorUID: urbach
Modification Date/Time: 2004-03-17 15:03:38
Gene Name:
Confidence Code:3
GeneProduct:probable metal transporting P-type ATPase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2217,KOG0207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
75.03% identical to cueA gb|AAM88668.1|AF390440_4 (AF390440) copper transporter [Pseudomonas putida]






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17579




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:28494




  
Author/Investigator(s):
        Adaikkalam V, Swarup S.





  
Title:
        Molecular characterization of an operon, cueAR, encoding a putative P1-type ATPase and a MerR-type regulatory protein involved in copper homeostasis in Pseudomonas putida.




  
PubMed:
        12213931


MedLine:
        




    
Source:
Microbiology. 2002 Sep;148(Pt 9):2857-67.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=12213931&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:217
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
378
                           PA3920_tr
                           translation of PA3920
                           792
                           99.74
                           99.87
                           0
                           3936.0
     

     
     
22145
                           gb|AAG07307.1|AE004809_7
                           (AE004809) probable metal transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
                           792
                           99.74
                           99.87
                           0
                           3936.0
     

     
     
22147
                           gb|AAN66213.1|AE016249_5
                           (AE016776) heavy metal translocating P-type ATPase [Pseudomonas putida KT2440]
                           803
                           75.34
                           83.81
                           15
                           2981.0
     

     
     
22146
                           gb|AAM88668.1|AF390440_4
                           (AF390440) copper transporter [Pseudomonas putida]
                           801
                           75.03
                           85.39
                           13
                           3031.0
     

     
     
22148
                           dbj|BAA96520.1|
                           (AB044355) ORFG [Pseudomonas syringae]
                           801
                           68.03
                           79.77
                           16
                           2696.0
     

     






      

          
GC ORFID: 43219How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3920Glimmer Score: 

          
Start: 3818907Stop: 3821285

          
Length: 2379


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3920 translation of PA3920Homolog Bit Score 1520.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3608 (ORF: BLASTX 1027.0), t_PA3920 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCGCCACGCTAACCGAGCTCGATCTGCCGGTCAGCGGCATGACTTGCGCGTCCTGCGCCGGCCGT 
GTCGAACGAGCCCTGAAGAAAGTGCCCGGGGTCGCGGCCGCCTCGGTCAACCTGGCCAGCGAGCAGGCCCGC 
GTACAGGCCCCGGCGGACAGCCTGCCGGCCCTGGTGGCGGCGGTCGAGCAGGCCGGCTACCAGGTTCCGGCG 
CGCAGCCTGGAACTGTCCATCGAGGGCATGACCTGCGCCAGTTGCGTCGGCCGGGTCGAGCGGGCGCTGAAG 
AAGGTGCCCGGCGTACGCGAGGTCAGCGTCAACCTGGCCAGCGAGCGCGCCCACCTCGACCTGCTCGGCGCC 
GTGGACAGCCAGGCCTTGCTGCAGGCGGTGGAACAGGCCGGCTACAAGGCCCGCCTGCTCGACGCGGGGCAA 
CCACGCCAGGACGATGCCGAGCGCCGCCTGCGCCGCGAACGCTGGTGGGTGATCGCCGCGCTGTTGCTGGCG 
TTGCCGCTGGTGCTGCCGATGCTGGTGGAATGGGCCGGCCTGCACTGGATGCTGCCGCCGTGGGCGCAGTTC 
CTCCTGGCGACCCCGGTGCAGTTCGTCATCGGCGCGCGCTTCTATGTCTCCGCCTGGCGCGCGGTGAAAGCC 
GGTGCCGGCAACATGGACCTGCTGGTCGCCCTCGGCACCAGCGCCGGCTACGGCCTCAGCGTCTACCTCTGG 
CTGACCGCCCCGCCCGGCCACATGCCGCACCTCTACTTCGAAGCCTCGACCGTGGTGATCGCCCTGATCCTC 
CTCGGCAAGTACCTGGAAAGCCGCGCCAAGCGCCAGACCGCCAGCGCCATCCGCGCCCTCGAGGCGTTGCGC 
CCGGAGCGCGCGGTGCGCCTGCGCGACGGTCGCGAGGAAGAGGTGGCGATCGCCGAGTTGCGCCTCGGCGAC 
GAGGTGGTGGTGCGTCCCGGCGAACGCTTCCCGGTGGACGGCGAGGTGCTCGACGGCAGCAGCCACGCCGAC 
GAGGCGCTGATCACCGGCGAGAGCCTGCCGGTGCCCAAGGCTCCCGGCGACAAGGTCACCGGCGGCGCGATC 
AACGGCGAAGGCCGCCTGCTCCTGCGCACCACCGCGCTCGGCGGGGAAACGGTGCTGGCGAAGATCATCCGC 
CTGGTGGAAGACGCCCAGGCCGCCAAGGCGCCGATCCAGAAGCTGGTGGACAAGGTCAGCCAGGTCTTCGTC 
CCGGTGGTGATCCTCATCGCACTGGTCACCCTCGGCGCCTGGCTGGTCGCCGGGGTCGGCCTGGAGCAGGCC 
CTGGTGAACGCCGTGGCGGTGCTGGTGATCGCCTGCCCCTGCGCCCTCGGCCTGGCCACCCCGACCGCGATC 
ATGGCCGGCACCGGCGTGGCCGCACGCCACGGCATCCTGATCAAGGACGCCGAGTCCCTGGAAGTCGCCCAT 
GCGGTCACCAGCGTGGCCTTCGACAAGACCGGCACCCTGACCTCCGGGCGACCGCAGATCATCCACCTCGGC 
GGCGACGATCAGGAGCAACTGCTCAGGCTCGCCGGCGCCCTGCAACGCGGCAGCGAGCACCCGCTGGCCAAG 
GCCGTGCTCGAGCGCTGCGCCGAGCGCGACCTGGAGGTTCCGCCGGTGAACGCCAGCCAGGCCCTCAGCGGT 
CGCGGCATCCAGGGCGAGGTCGAGGGTCGCCGGCTGGCCCTAGGCAACCGCCGCCTGCTCGACGAGCAGGAA 
CTCAAGCCCGGCGCGCTGGCGAGTGCCGCCGCGGACTGGGAGGCCGAGGGCCGCACCCTGTCCTGGCTGCTG 
GAACTGGCTCCGGAGAAACGCGTGCTCGGCCTGTTCGCCTTCGGCGACAGCCTCAAGGACGGCGCCGCCGAA 
GCGGTGGAGGCCCTGCGCGAACGGGATATCCACAGCCACCTGATCACCGGCGACAACCGCGGCAGCGCGGCG 
GTGGTGGCCAAGGCCCTGGGCATCGACGACGTACACGCGGAAGTGCTGCCGGCGGACAAGGCCGCCACGGTC 
GCCGAGCTGAAAGGCCGGGGCCGGGTGGTGGCGATGGTCGGCGACGGCATCAACGACGCCCCGGCGCTGGCC 
GCCGCAGACGTCGGCATCGCCATGGGTGGCGGCACCGACGTGGCCATGCACGCCGCCGGCATCACCCTGATG 
CGCGGCGACCCGCGCCTGGTGCCGGCGGCGCTGGACATCTCGCGGCGGACCTACGCGAAGATCCGCCAGAAC 
CTGTTCTGGGCCTTCATCTACAACGTGATCGGCATCCCGCTGGCGGCCTTCGGCCTGCTCAACCCGATGGTG 
GCGGGCGCGGCGATGGCCTTCTCCAGCGTCAGCGTGGTCGGCAACGCCCTGCTCCTGCGACGCTGGAAGCCC 
TGA