ViewGene
Locus Name:
GeneID:
Location:

GeneID:2169
TrivialName: PA14_42050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42050
PAO1 Ortholog Locus:PA1739
Sequence Length:972
Protein Length:323
Start: 3751011
Stop: 3750040
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05128.1|AE004600_4 (AE004600) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 320/323 (99%), Positives = 321/323 (99%)
Sequence:
ATGCAGCATGTCCGTCTTGGCAATAGCGGCCTGAAAGTCTCCCGGCTCTGCCTGGGGTGCATGACCTATGGC
GATCCGGCGTGGCGTCCGTGGGTGCTGGACGAGGAACGGGCGCGTCCGTTCATTCGCGAGGCGCTGGAAGCC
GGGATCGACTTCTTCGACAGTGCCGATATCTATTCCACCGGCGAGAGCGAGCGGATCCTCGGGCGCGCGCTC
AGGGACTTCGCGCAGCGCGAGGACCTGGTAATCGCCACCAAGGCGTTCTTTCCCATGAGCGACAGGCCCAAC
GCCTGCGGCTTGTCGCGTAAGCACCTGCTTGCCAGCGTGGATGCCTCGCTGCGGCGGTTGGGTACGGACTAC
CTGGATCTCTTCGTGATCCATCGCTTCGATCCGGACACCCCGATCGCGGAAACCTGCGAAACCCTCGACAGC
CTGGTGCGTGTCGGCAAGGTCCGTTACCTCGGCGCCTCGTCGATGCCGGCCTGGCGCTTCATGAAGATGCTC
GCCTTCCAGCGCCACCACGGCCTGGCGCAATTCATCTCGATGCAGAGCCAGTACAACCTGATCGTTCGCGAG
GACGAGGAGGACCTCATGCCGCTGTGCCGGGAAGAGGGGATCGCGTTGACGCCCTGGTCGCCGCTGGCGCGT
GGGCTGCTGGCCGGAGCGCGAAGCGCCGGCACGCTGCGGACCCGGACGGACGAACAGGCCCCGCGCTGGTAC
GGCGGCAGGGAGGAAGTCGAGTCGACCCTCGGCGCGTTGGAGAAACTCGCCGCAGCCCGCGGGCTTCCACCG
GCGCAACTCGCCCTGGCCTGGCTGCTTGGCCGGAACGGTGTCGCCGCGCCGATCGTCGGCCTGTCCAGGCCG
CATCACCTCGAGGATGCCCTCGCGGCGCTGACGCTGGACCTCGCCGAAGAGGAGTGCGCCACGCTGGAGGCG
CCGCTCACGGTGCGCGCCCGGACCCCGCGCTGGTAG
Translation:
MQHVRLGNSGLKVSRLCLGCMTYGDPAWRPWVLDEERARPFIREALEAGIDFFDSADIYSTGESERILGRAL
RDFAQREDLVIATKAFFPMSDRPNACGLSRKHLLASVDASLRRLGTDYLDLFVIHRFDPDTPIAETCETLDS
LVRVGKVRYLGASSMPAWRFMKMLAFQRHHGLAQFISMQSQYNLIVREDEEDLMPLCREEGIALTPWSPLAR
GLLAGARSAGTLRTRTDEQAPRWYGGREEVESTLGALEKLAAARGLPPAQLALAWLLGRNGVAAPIVGLSRP
HHLEDALAALTLDLAEEECATLEAPLTVRARTPRW*
AnnotationID:2177GeneID:2169
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 10:10:02
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1739
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0667,pfam00248,COG4989
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33593.1| (BX640446) putative oxidoreductase [Bordetella bronchiseptica]
          Length = 326

 Score =  348 bits (894), Expect = 2e-95
 Identities = 172/315 (54%), Positives = 229/315 (72%), Gaps = 3/315 (0%)

>gb|AAN68974.1|AE016529_5 (AE016786) oxidoreductase, aldo/keto reductase family [Pseudomonas
           putida KT2440]
          Length = 331

 Score =  345 bits (884), Expect = 3e-94
 Identities = 176/329 (53%), Positives = 235/329 (71%), Gaps = 10/329 (3%)

>dbj|BAC69308.1| (AP005027) putative aldo/keto reductase [Streptomyces avermitilis
           MA-4680]
          Length = 322

 Score =  340 bits (871), Expect = 9e-93
 Identities = 170/320 (53%), Positives = 231/320 (72%), Gaps = 4/320 (1%)






 
Structural Features:
COG0667, Tas, Predicted oxidoreductases 
(related to aryl-alcohol dehydrogenases) 
[Energy production and conversion]
CD-Length = 316 residues,  97.5% aligned
Score =  317 bits (813), Expect = 1e-87
Identities = 149/316 (47%), Positives = 196/316 (62%), Gaps = 10/316 (3%)

pfam00248, Aldo_ket_red, Aldo/keto reductase family.
CD-Length = 279 residues, 100.0% aligned
Score =  195 bits (497), Expect = 6e-51
Identities = 101/320 (31%), Positives = 156/320 (48%), Gaps = 52/320 (16%)

COG4989, COG4989, Predicted oxidoreductase
CD-Length = 298 residues,  95.3% aligned
Score =  148 bits (374), Expect = 1e-36
Identities = 86/312 (27%), Positives = 131/312 (41%), Gaps = 34/312 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4341




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21487




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37172




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2169_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2169
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3711
                           PA1739_tr
                           translation of PA1739
                           323
                           99.07
                           99.38
                           0
                           1667.0
     

     
     
114409
                           gb|AAG05128.1|AE004600_4
                           (AE004600) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           323
                           99.07
                           99.38
                           0
                           1667.0
     

     
     
114413
                           gb|AAN68974.1|AE016529_5
                           (AE016786) oxidoreductase, aldo/keto reductase family [Pseudomonas putida KT2440]
                           332
                           53.01
                           70.78
                           10
                           887.0
     

     
     
114410
                           emb|CAE33593.1|
                           (BX640446) putative oxidoreductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           331
                           52.56
                           70.09
                           13
                           892.0
     

     
     
114411
                           emb|CAE36928.1|
                           (BX640427) putative oxidoreductase [Bordetella parapertussis]
                           331
                           52.56
                           70.09
                           13
                           890.0
     

     






      

          
GC ORFID: 45171How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1739Glimmer Score: 

          
Start: 1202898Stop: 1203869

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1739 translation of PA1739Homolog Bit Score 646.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene608 (ORF: BLASTX 336.0), t_PA1739 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCATGTCCGTCTTGGCAATAGCGGCCTGAAAGTCTCCCGGCTCTGCCTGGGGTGCATGACCTATGGC 
GATCCGGCGTGGCGTCCGTGGGTGCTGGACGAGGAACGGGCGCGTCCGTTCATTCGCGAGGCGCTGGAAGCC 
GGGATCGACTTCTTCGACAGTGCCGATATCTATTCCACCGGCGAGAGCGAGCGGATCCTCGGGCGCGCGCTC 
AGGGACTTCGCGCAGCGCGAGGACCTGGTAATCGCCACCAAGGCGTTCTTTCCCATGAGCGACAGGCCCAAC 
GCCTGCGGCTTGTCGCGTAAGCACCTGCTTGCCAGCGTGGATGCCTCGCTGCGGCGGTTGGGTACGGACTAC 
CTGGATCTCTTCGTGATCCATCGCTTCGATCCGGACACCCCGATCGCGGAAACCTGCGAAACCCTCGACAGC 
CTGGTGCGTGTCGGCAAGGTCCGTTACCTCGGCGCCTCGTCGATGCCGGCCTGGCGCTTCATGAAGATGCTC 
GCCTTCCAGCGCCACCACGGCCTGGCGCAATTCATCTCGATGCAGAGCCAGTACAACCTGATCGTTCGCGAG 
GACGAGGAGGACCTCATGCCGCTGTGCCGGGAAGAGGGGATCGCGTTGACGCCCTGGTCGCCGCTGGCGCGT 
GGGCTGCTGGCCGGAGCGCGAAGCGCCGGCACGCTGCGGACCCGGACGGACGAACAGGCCCCGCGCTGGTAC 
GGCGGCAGGGAGGAAGTCGAGTCGACCCTCGGCGCGTTGGAGAAACTCGCCGCAGCCCGCGGGCTTCCACCG 
GCGCAACTCGCCCTGGCCTGGCTGCTTGGCCGGAACGGTGTCGCCGCGCCGATCGTCGGCCTGTCCAGGCCG 
CATCACCTCGAGGATGCCCTCGCGGCGCTGACGCTGGACCTCGCCGAAGAGGAGTGCGCCACGCTGGAGGCG 
CCGCTCACGGTGCGCGCCCGGACCCCGCGCTGGTAG