ViewGene
Locus Name:
GeneID:
Location:

GeneID:2168
TrivialName: PA14_47390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47390
PAO1 Ortholog Locus:PA1301
Sequence Length:984
Protein Length:327
Start: 4224161
Stop: 4223178
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04690.1|AE004559_9 (AE004559) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 325/327 (99%), Positives = 326/327 (99%)
Sequence:
ATGAAGCCGCTGGAACGACTGGAACCGCTGTTCGCCGACGAAACCGAAGAGGACATCGATCACCGCGCCGCC
TACTGGTTCAGCCGGCGTCGTTCCGGGCATTTCAGCGCTGCCTGCCGGGCCGAGCTGGAGGATTGGCTATGC
GCCGATCCGCGCCATCGCGAAGCGCTCGAGGGCATGGAGCGGCTCTGGCGCGAATTCGACGGCCTGCCGCGC
CCGGCGCTGGACGATATTCCCGAACCGGTGCCGGCCTGGCGCCTGCCCCGGGCGCTGGCGGCGGCGTTCTTC
GTGTTCTGCGCGCTGCTCGTCGCCACCCTGTTCTGGCGCGACCAGTCGCTCGGGCCGAACCTCGCCTACGGC
ACGGCGCCTGGCGAGCAGCGCGAGGTGGTCCTGGCGGACGGCTCGAAGCTGTTCCTCGACGTCGATACCCAA
GTGCAGGTGCGTTACGCCGAGCGCACCCGCGACGTGCTGTTGAAGAAAGGCGAGGTGTTCTTCGTGGTCAGC
CACGATCCGGCCCGGCCGTTCCGGGTCGGCAGCGGCGACAGCCGGGTCACCGTACTCGGTACCCAGTTCAGC
GTCCGGCGCAACGCGCAGGCCCTCGCCGTGGCGGTGAAACAGGGGCGCGTGGCGTTGCAGCCGTCCCTGGAG
AAGGATGCCGAACATGTGCTGCTGGCTGGCGACAGCGCGCGCCTGGACCTCGCCGACCAGCGCCTGGAACTC
GGCCATGTGGCGCCGGAGCAGGTCGCCAGTTGGCGCGATGGGCAACTGGTGTTCCGCGACAAGCCGCTGGGC
GAACTGGTGGAGGAACTGTCGCGCTATCGTGCCGCGCCGATCCGCCTGGGAGATCCCCGGCTTGCCGGCAAG
CGGGTCTCCGGCACGGTGCGGATCGCCCGCCCCGACGATTTTCTCCTCGCTCTGCCGGCGCTATTGCCGGTG
CGGGTACAGCCGCAGGCTGGCGGCGAGGTGCTGATCCTGGCGCGCTGA
Translation:
MKPLERLEPLFADETEEDIDHRAAYWFSRRRSGHFSAACRAELEDWLCADPRHREALEGMERLWREFDGLPR
PALDDIPEPVPAWRLPRALAAAFFVFCALLVATLFWRDQSLGPNLAYGTAPGEQREVVLADGSKLFLDVDTQ
VQVRYAERTRDVLLKKGEVFFVVSHDPARPFRVGSGDSRVTVLGTQFSVRRNAQALAVAVKQGRVALQPSLE
KDAEHVLLAGDSARLDLADQRLELGHVAPEQVASWRDGQLVFRDKPLGELVEELSRYRAAPIRLGDPRLAGK
RVSGTVRIARPDDFLLALPALLPVRVQPQAGGEVLILAR*
AnnotationID:2176GeneID:2168
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 13:01:09
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA1301
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative Fe2+-dicitrate sensor, membrane component
Functional Category Confidence Code:5
COGs:COG3712,pfam04773
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66491.1|AE016278_2 (AE016777) transmembrane sensor, putative [Pseudomonas putida
           KT2440]
          Length = 328

 Score =  176 bits (445), Expect = 2e-43
 Identities = 115/315 (36%), Positives = 165/315 (52%), Gaps = 9/315 (2%)






 
Structural Features:
COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues, 100.0% aligned
Score =  271 bits (693), Expect = 1e-73
Identities = 137/323 (42%), Positives = 169/323 (52%), Gaps = 3/323 (0%)

pfam04773, FecR, FecR protein. FecR is involved in regulation 
of iron dicitrate transport.
CD-Length = 323 residues,  99.7% aligned
Score =  264 bits (676), Expect = 9e-72
Identities = 153/325 (47%), Positives = 182/325 (56%), Gaps = 14/325 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4339




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21485




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37490




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2168_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2168
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3710
                           PA1301_tr
                           translation of PA1301
                           327
                           99.38
                           99.69
                           0
                           1667.0
     

     
     
114408
                           gb|AAG04690.1|AE004559_9
                           (AE004559) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           327
                           99.38
                           99.69
                           0
                           1667.0
     

     






      

          
GC ORFID: 45170How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1301Glimmer Score: 

          
Start: 729748Stop: 730731

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1301 translation of PA1301Homolog Bit Score 646.0

          
Other Homologs:  t_PA1301 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCCGCTGGAACGACTGGAACCGCTGTTCGCCGACGAAACCGAAGAGGACATCGATCACCGCGCCGCC 
TACTGGTTCAGCCGGCGTCGTTCCGGGCATTTCAGCGCTGCCTGCCGGGCCGAGCTGGAGGATTGGCTATGC 
GCCGATCCGCGCCATCGCGAAGCGCTCGAGGGCATGGAGCGGCTCTGGCGCGAATTCGACGGCCTGCCGCGC 
CCGGCGCTGGACGATATTCCCGAACCGGTGCCGGCCTGGCGCCTGCCCCGGGCGCTGGCGGCGGCGTTCTTC 
GTGTTCTGCGCGCTGCTCGTCGCCACCCTGTTCTGGCGCGACCAGTCGCTCGGGCCGAACCTCGCCTACGGC 
ACGGCGCCTGGCGAGCAGCGCGAGGTGGTCCTGGCGGACGGCTCGAAGCTGTTCCTCGACGTCGATACCCAA 
GTGCAGGTGCGTTACGCCGAGCGCACCCGCGACGTGCTGTTGAAGAAAGGCGAGGTGTTCTTCGTGGTCAGC 
CACGATCCGGCCCGGCCGTTCCGGGTCGGCAGCGGCGACAGCCGGGTCACCGTACTCGGTACCCAGTTCAGC 
GTCCGGCGCAACGCGCAGGCCCTCGCCGTGGCGGTGAAACAGGGGCGCGTGGCGTTGCAGCCGTCCCTGGAG 
AAGGATGCCGAACATGTGCTGCTGGCTGGCGACAGCGCGCGCCTGGACCTCGCCGACCAGCGCCTGGAACTC 
GGCCATGTGGCGCCGGAGCAGGTCGCCAGTTGGCGCGATGGGCAACTGGTGTTCCGCGACAAGCCGCTGGGC 
GAACTGGTGGAGGAACTGTCGCGCTATCGTGCCGCGCCGATCCGCCTGGGAGATCCCCGGCTTGCCGGCAAG 
CGGGTCTCCGGCACGGTGCGGATCGCCCGCCCCGACGATTTTCTCCTCGCTCTGCCGGCGCTATTGCCGGTG 
CGGGTACAGCCGCAGGCTGGCGGCGAGGTGCTGATCCTGGCGCGCTGA