ViewGene
Locus Name:
GeneID:
Location:

GeneID:2167
TrivialName: PA14_06130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06130
PAO1 Ortholog Locus:PA0468
Sequence Length:951
Protein Length:316
Start: 541727
Stop: 540777
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03857.1|AE004484_9 (AE004484) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 315/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGCGTCACCTGCCCTACCCGCTGCTGGGCCTGCTCCTGGCCCTGTCGTCGACCGGCGCCGCCCTGGCCGGC
GAACAGTACTACCCGCTGGACAAGGGCTCCGCGCCCTACGCGGTCGCGCCCAGTGCACAGGGTGCGGTCTGG
TACGGCGCGGACGGCGGGCATTCGCTGGGGCGCCTCGACCCGACCAGTGGCGAGAGCGTGCAGGTGCCGCTC
GGCGAAGGCGCGCGGCCGCGAGCCATCGTCAGCGACGAGAGCGGCAACGCCTGGGTGCTCGACAGTGGCCTC
AACGCCATCCTTCGCATCGGCGGCGAGCGCCTGGGCAGCGAACGTTTCCCGCTACCGGCCAAGGCCGCGCCG
GCCGGGCTCGAGTCCGCGGTATTCGACGACGACGGGCGCCTCTGGTTCACCGGCAGCCGCGGCTTCCACGGT
CGCCTCGACCCAGCCAGGCGCCTGGTGGAGGTCTGGCCCTCGCCCCAGGGCAAGGCGGCGAACGGCATCTGC
GTCACCCCGGACGGCGAggtCTGGTACGCGCAGGACGACGCGCTGGTGCATGTCGATCCGCTCGACGGCAGC
GCCGAGCGGTTGCCCGCGCCTGAAGGCACGAAGGCCTTGCGCGGGATCGGCGCCGACTCCATCGGCAGGCTC
TGGGCCAGCGACAGCGGTGGCGCCCGGCTGTACCGCTACGATCCCAGCGATGCCTCGTGGCAGAGCTGGCCG
CTGCCGGACAGCCAGGCCCGCCCGGACAGCCTGCGGGTCGACGCCATGGACCGTGTCTGGCTGCACGACGCC
GCCAGCGGGGCGCTCTTGCGTTTCGACAGTGAGCAGGCGACATTCCGCGTCCTGCCCAGCGACCGGCCGGCG
CCCGGCAACGCCCTGCTCGGCGGTCGCCCCGGAGAAACCTGGAGCGCCGAGCCTGCCGCCGATCGTCTGCGC
GTCGTCCGCGACTGA
Translation:
MRHLPYPLLGLLLALSSTGAALAGEQYYPLDKGSAPYAVAPSAQGAVWYGADGGHSLGRLDPTSGESVQVPL
GEGARPRAIVSDESGNAWVLDSGLNAILRIGGERLGSERFPLPAKAAPAGLESAVFDDDGRLWFTGSRGFHG
RLDPARRLVEVWPSPQGKAANGICVTPDGEVWYAQDDALVHVDPLDGSAERLPAPEGTKALRGIGADSIGRL
WASDSGGARLYRYDPSDASWQSWPLPDSQARPDSLRVDAMDRVWLHDAASGALLRFDSEQATFRVLPSDRPA
PGNALLGGRPGETWSAEPAADRLRVVRD*
AnnotationID:2175GeneID:2167
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative streptogramin lyase
Cell Localization:()
Synonyms:PA0468
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4257
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4257, Vgb, Streptogramin lyase [Defense mechanisms]
CD-Length = 353 residues,  87.3% aligned
Score =  385 bits (990), Expect = 4e-108
Identities = 148/309 (47%), Positives = 183/309 (59%), Gaps = 4/309 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21483




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33781




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2167_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2167
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3709
                           PA0468_tr
                           translation of PA0468
                           316
                           99.68
                           99.68
                           0
                           1670.0
     

     
     
114407
                           gb|AAG03857.1|AE004484_9
                           (AE004484) hypothetical protein PA0468 [Pseudomonas aeruginosa PAO1]
                           316
                           99.68
                           99.68
                           0
                           1670.0
     

     






      

          
GC ORFID: 45169How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0468Glimmer Score: 

          
Start: 6343069Stop: 6342119

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0468 translation of PA0468Homolog Bit Score 647.0

          
Other Homologs:  t_PA0468 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCACCTGCCCTACCCGCTGCTGGGCCTGCTCCTGGCCCTGTCGTCGACCGGCGCCGCCCTGGCCGGC 
GAACAGTACTACCCGCTGGACAAGGGCTCCGCGCCCTACGCGGTCGCGCCCAGTGCACAGGGTGCGGTCTGG 
TACGGCGCGGACGGCGGGCATTCGCTGGGGCGCCTCGACCCGACCAGTGGCGAGAGCGTGCAGGTGCCGCTC 
GGCGAAGGCGCGCGGCCGCGAGCCATCGTCAGCGACGAGAGCGGCAACGCCTGGGTGCTCGACAGTGGCCTC 
AACGCCATCCTTCGCATCGGCGGCGAGCGCCTGGGCAGCGAACGTTTCCCGCTACCGGCCAAGGCCGCGCCG 
GCCGGGCTCGAGTCCGCGGTATTCGACGACGACGGGCGCCTCTGGTTCACCGGCAGCCGCGGCTTCCACGGT 
CGCCTCGACCCAGCCAGGCGCCTGGTGGAGGTCTGGCCCTCGCCCCAGGGCAAGGCGGCGAACGGCATCTGC 
GTCACCCCGGACGGCGAggtCTGGTACGCGCAGGACGACGCGCTGGTGCATGTCGATCCGCTCGACGGCAGC 
GCCGAGCGGTTGCCCGCGCCTGAAGGCACGAAGGCCTTGCGCGGGATCGGCGCCGACTCCATCGGCAGGCTC 
TGGGCCAGCGACAGCGGTGGCGCCCGGCTGTACCGCTACGATCCCAGCGATGCCTCGTGGCAGAGCTGGCCG 
CTGCCGGACAGCCAGGCCCGCCCGGACAGCCTGCGGGTCGACGCCATGGACCGTGTCTGGCTGCACGACGCC 
GCCAGCGGGGCGCTCTTGCGTTTCGACAGTGAGCAGGCGACATTCCGCGTCCTGCCCAGCGACCGGCCGGCG 
CCCGGCAACGCCCTGCTCGGCGGTCGCCCCGGAGAAACCTGGAGCGCCGAGCCTGCCGCCGATCGTCTGCGC 
GTCGTCCGCGACTGA