ViewGene
Locus Name:
GeneID:
Location:

GeneID:2165
TrivialName: PA14_66540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66540
PAO1 Ortholog Locus:PA5033
Sequence Length:981
Protein Length:326
Start: 5935291
Stop: 5936271
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08418.1|AE004916_7 (AE004916) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 324/326 (99%), Positives = 326/326 (100%)
Sequence:
ATGAAACCAGCGATCAAGCGCGCCTGCCTGCTCGGCACGGCACTGTTCTCCCTCTGCGCCAGCGCAGCCCAG
GCGGCCGGCGTTCTGGTAGGAACCTGGGACCTGCGGGGCAACGGCCAGCTCGCCGCGGTCTACCGCGACGGC
GCCAACCTGCAGGTGGTGGAAGGCGGCAGCACCCGCAACTACAGCTTCGGCAACGTGGTCTGGTCGGTCTTC
GGCGCCACCGATACCGACGGCCAGCCCGGCGCGGAAATCCTGGTCAAGGCCGGTCCCGACCTGGTGATCGTC
TCCCACGCCAGCACCACCCAGCGCAAGTACCCGGTAGGCAACGTCTCCTGGGCGATCATGCGTGCCACCGAC
GTCGACAACGTCGCCGGCGACGAAGTCATCCTCAGCATCGGCAACGGCGTGCGCACCGTATTCGATCGCACC
CGTACGCAACGCGACGCCACCTTCAGCTACAACGGCACCTGGGGCCTGTTCGACGTCGCCGACGTGGACGGC
GCGCCGGGCAAGGAACTGGTGCTGAACATGGGCAACGGCGTCAAGGTCATCGACCCGCGCACCAGTGGCGCC
AAGGACTTCACCTTCAGCGGCTACCACGCGCTCGCACAGATCGCCGACCTCGACGGCCAGCCCGGCGCGGAG
ATCATCGGCCGCACCAGCACCGGCATCTACGTGATCAGCAACGCCACTTCCCGCAAGGAATACAGCATCGGC
GCCAGCGCCTGGGCACTCTATGGCGGCACCGCGGACACCGACGGCAAGCCGGGCAACGAGCTGATCGTGGTG
ATGCAGGGCAAGGTGCGGGTCATCCACCACGCCAGCGGCGCCAGCAGCGACTACCGCATCGGCGACGTCAAC
TACAGCATCGATTCGGTGGCCGACATGGATGGCCAGCCGGGCGCGGAAATCCTCGTGCGCGACGCCAACGGC
AAGCTGTTCGTGATCAACGACCGCACCGGCAAGGTAAGCAACTGA
Translation:
MKPAIKRACLLGTALFSLCASAAQAAGVLVGTWDLRGNGQLAAVYRDGANLQVVEGGSTRNYSFGNVVWSVF
GATDTDGQPGAEILVKAGPDLVIVSHASTTQRKYPVGNVSWAIMRATDVDNVAGDEVILSIGNGVRTVFDRT
RTQRDATFSYNGTWGLFDVADVDGAPGKELVLNMGNGVKVIDPRTSGAKDFTFSGYHALAQIADLDGQPGAE
IIGRTSTGIYVISNATSRKEYSIGASAWALYGGTADTDGKPGNELIVVMQGKVRVIHHASGASSDYRIGDVN
YSIDSVADMDGQPGAEILVRDANGKLFVINDRTGKVSN*
AnnotationID:2173GeneID:2165
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5033
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21479




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2165
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3707
                           PA5033_tr
                           translation of PA5033
                           326
                           99.38
                           99.99
                           0
                           1670.0
     

     
     
114302
                           gb|AAG08418.1|AE004916_7
                           (AE004916) hypothetical protein PA5033 [Pseudomonas aeruginosa PAO1]
                           326
                           99.38
                           99.99
                           0
                           1670.0
     

     






      

          
GC ORFID: 45167How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5033Glimmer Score: 

          
Start: 5198974Stop: 5199954

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5033 translation of PA5033Homolog Bit Score 647.0

          
Other Homologs:  t_PA5033 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCAGCGATCAAGCGCGCCTGCCTGCTCGGCACGGCACTGTTCTCCCTCTGCGCCAGCGCAGCCCAG 
GCGGCCGGCGTTCTGGTAGGAACCTGGGACCTGCGGGGCAACGGCCAGCTCGCCGCGGTCTACCGCGACGGC 
GCCAACCTGCAGGTGGTGGAAGGCGGCAGCACCCGCAACTACAGCTTCGGCAACGTGGTCTGGTCGGTCTTC 
GGCGCCACCGATACCGACGGCCAGCCCGGCGCGGAAATCCTGGTCAAGGCCGGTCCCGACCTGGTGATCGTC 
TCCCACGCCAGCACCACCCAGCGCAAGTACCCGGTAGGCAACGTCTCCTGGGCGATCATGCGTGCCACCGAC 
GTCGACAACGTCGCCGGCGACGAAGTCATCCTCAGCATCGGCAACGGCGTGCGCACCGTATTCGATCGCACC 
CGTACGCAACGCGACGCCACCTTCAGCTACAACGGCACCTGGGGCCTGTTCGACGTCGCCGACGTGGACGGC 
GCGCCGGGCAAGGAACTGGTGCTGAACATGGGCAACGGCGTCAAGGTCATCGACCCGCGCACCAGTGGCGCC 
AAGGACTTCACCTTCAGCGGCTACCACGCGCTCGCACAGATCGCCGACCTCGACGGCCAGCCCGGCGCGGAG 
ATCATCGGCCGCACCAGCACCGGCATCTACGTGATCAGCAACGCCACTTCCCGCAAGGAATACAGCATCGGC 
GCCAGCGCCTGGGCACTCTATGGCGGCACCGCGGACACCGACGGCAAGCCGGGCAACGAGCTGATCGTGGTG 
ATGCAGGGCAAGGTGCGGGTCATCCACCACGCCAGCGGCGCCAGCAGCGACTACCGCATCGGCGACGTCAAC 
TACAGCATCGATTCGGTGGCCGACATGGATGGCCAGCCGGGCGCGGAAATCCTCGTGCGCGACGCCAACGGC 
AAGCTGTTCGTGATCAACGACCGCACCGGCAAGGTAAGCAACTGA