ViewGene
Locus Name:
GeneID:
Location:

GeneID:2164
TrivialName: PA14_61080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61080
PAO1 Ortholog Locus:PA4616
Sequence Length:999
Protein Length:332
Start: 5447111
Stop: 5446113
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08004.1|AE004875_10 (AE004875) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 330/332 (99%), Positives = 331/332 (99%)
Sequence:
ATGTTCAAGCCGTTTGTCGGTGTGGCGCTCGCCGCACTGTTCGCCGTTTCCGCCGTCGCCCATGCCGAGGAC
GCCGGCCCGATCGTGATCAAGTTCTCCCATGTGGTCTCCGACGACACGCCCAAGGGCAAGGGGGCGCTGTTG
TTCAAGAAGCTTGCCGAGGAGCGTCTGCCGGGCAAGGTCAAGGTCGAGGTCTACCCCAACTCGACGCTGTTC
GGCGACGCCGACGAGATCGAGGCCCTGCGCGCCAACAAGGTGCAGATGCTGGCCACCTCGCTGTCCAAGTTC
GAGCCCTATACCAAGCAACTCCAGGTGTTCGACCTGCCGTTCCTGTTCGATGACCTGGAGGCCCTGAAGCGT
TTCCAGAAGCGCGACAAGAGCCGCGAACTGCTGCGCTCCATGGCCAAGCACGGTATCTATGGCCTGGCCTAC
TGGAACAACGGCATGAAGCAGCTTTCCGCCACTCGCGAGCTGCACCGGCCGGACGATGCCAAGGGCCTGGTC
TTCCGTATCCAGCCGTCGTCGGTGCTGGAAGCGCAGTTCGCCATGCTCGGCGCCACCGCCAAGCAGTTGTCC
TACGCCGAGACCCTCAAGGCCATGCAGGCCGGCAGCGTGCAGGGCACCGAGAACACCTGGTCGAACCTCGCC
GGACAGAAGATCGACAGCGTGCAGCCGTACATCACCGAGACCAATCACGGCGCGCTCAGCTACATGCTGATC
ACCAGCTCGGCATTCTGGACCAGCATCCCCTACCAGACCCGCACTGAACTGGAGAGCATCGTCGACGAGGTC
ACCCTGGTGGTGAACAAGGAAGCCGAAGCGCTGAACCAGAAGGAGCGCGAGCACCTGCTGGCCGCCGGCAAG
AGCCGCCTGGTCAGCCTCAGCGCGGAAGAGCACGAGGCCTGGCGCAACGCCATGAAGCCGCTGTGGAAGAAC
TACGAGGCGCAGATCGGCAGCGACGTGCTGCGCGCGGCCCAGGTGGTCAACCGCAAGCGCTGA
Translation:
MFKPFVGVALAALFAVSAVAHAEDAGPIVIKFSHVVSDDTPKGKGALLFKKLAEERLPGKVKVEVYPNSTLF
GDADEIEALRANKVQMLATSLSKFEPYTKQLQVFDLPFLFDDLEALKRFQKRDKSRELLRSMAKHGIYGLAY
WNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAMLGATAKQLSYAETLKAMQAGSVQGTENTWSNLA
GQKIDSVQPYITETNHGALSYMLITSSAFWTSIPYQTRTELESIVDEVTLVVNKEAEALNQKEREHLLAAGK
SRLVSLSAEEHEAWRNAMKPLWKNYEAQIGSDVLRAAQVVNRKR*
AnnotationID:2172GeneID:2164
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative C4-dicarboxylate-binding protein
Cell Localization:()
Synonyms:dctP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03480,COG1638
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN56138.1|AE015750_5 (AE015750) C4-dicarboxylate-binding periplasmic protein [Shewanella
           oneidensis MR-1]
          Length = 339

 Score =  306 bits (785), Expect = 9e-83
 Identities = 156/323 (48%), Positives = 217/323 (67%), Gaps = 3/323 (0%)


>gb|AAF95077.1| (AE004268) C4-dicarboxylate-binding periplasmic protein [Vibrio
           cholerae]
          Length = 332

 Score =  289 bits (739), Expect = 2e-77
 Identities = 148/333 (44%), Positives = 215/333 (64%), Gaps = 3/333 (0%)










 
Structural Features:
pfam03480, SBP_bac_7, Bacterial extracellular solute-binding protein, 
family 7.
CD-Length = 287 residues, 100.0% aligned
Score =  305 bits (783), Expect = 1e-83
Identities = 124/287 (43%), Positives = 173/287 (60%), Gaps = 1/287 (0%)

COG1638, DctP, TRAP-type C4-dicarboxylate transport system, 
periplasmic component 
[Carbohydrate transport and metabolism]
CD-Length = 332 residues, 100.0% aligned
Score =  301 bits (771), Expect = 2e-82
Identities = 118/332 (35%), Positives = 174/332 (52%), Gaps = 2/332 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21477




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31608




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2164_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2164
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3704
                           PA4616_tr
                           translation of PA4616
                           332
                           99.39
                           99.69
                           0
                           1670.0
     

     
     
114286
                           gb|AAG08004.1|AE004875_10
                           (AE004875) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1]
                           332
                           99.39
                           99.69
                           0
                           1670.0
     

     
     
3705
                           PA0884_tr
                           translation of PA0884
                           332
                           54.21
                           72.28
                           1
                           937.0
     

     
     
114287
                           gb|AAG04273.1|AE004523_1
                           (AE004523) probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas aeruginosa PAO1]
                           332
                           54.21
                           72.28
                           1
                           937.0
     

     
     
114288
                           gb|AAG08552.1|AE004929_7
                           (AE004929) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1]
                           333
                           53.15
                           71.77
                           3
                           929.0
     

     






      

          
GC ORFID: 45166How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4616Glimmer Score: 

          
Start: 4710791Stop: 4709793

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4616 translation of PA4616Homolog Bit Score 647.0

          
Other Homologs:  t_PA0884 (ORF: BLASTX 365.0), t_PA5167 (ORF: BLASTX 363.0), t_PA4616 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAGCCGTTTGTCGGTGTGGCGCTCGCCGCACTGTTCGCCGTTTCCGCCGTCGCCCATGCCGAGGAC 
GCCGGCCCGATCGTGATCAAGTTCTCCCATGTGGTCTCCGACGACACGCCCAAGGGCAAGGGGGCGCTGTTG 
TTCAAGAAGCTTGCCGAGGAGCGTCTGCCGGGCAAGGTCAAGGTCGAGGTCTACCCCAACTCGACGCTGTTC 
GGCGACGCCGACGAGATCGAGGCCCTGCGCGCCAACAAGGTGCAGATGCTGGCCACCTCGCTGTCCAAGTTC 
GAGCCCTATACCAAGCAACTCCAGGTGTTCGACCTGCCGTTCCTGTTCGATGACCTGGAGGCCCTGAAGCGT 
TTCCAGAAGCGCGACAAGAGCCGCGAACTGCTGCGCTCCATGGCCAAGCACGGTATCTATGGCCTGGCCTAC 
TGGAACAACGGCATGAAGCAGCTTTCCGCCACTCGCGAGCTGCACCGGCCGGACGATGCCAAGGGCCTGGTC 
TTCCGTATCCAGCCGTCGTCGGTGCTGGAAGCGCAGTTCGCCATGCTCGGCGCCACCGCCAAGCAGTTGTCC 
TACGCCGAGACCCTCAAGGCCATGCAGGCCGGCAGCGTGCAGGGCACCGAGAACACCTGGTCGAACCTCGCC 
GGACAGAAGATCGACAGCGTGCAGCCGTACATCACCGAGACCAATCACGGCGCGCTCAGCTACATGCTGATC 
ACCAGCTCGGCATTCTGGACCAGCATCCCCTACCAGACCCGCACTGAACTGGAGAGCATCGTCGACGAGGTC 
ACCCTGGTGGTGAACAAGGAAGCCGAAGCGCTGAACCAGAAGGAGCGCGAGCACCTGCTGGCCGCCGGCAAG 
AGCCGCCTGGTCAGCCTCAGCGCGGAAGAGCACGAGGCCTGGCGCAACGCCATGAAGCCGCTGTGGAAGAAC 
TACGAGGCGCAGATCGGCAGCGACGTGCTGCGCGCGGCCCAGGTGGTCAACCGCAAGCGCTGA