ViewGene
Locus Name:
GeneID:
Location:

GeneID:2163
TrivialName: PA14_56160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56160
PAO1 Ortholog Locus:PA4322
Sequence Length:1008
Protein Length:335
Start: 5014752
Stop: 5015759
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07710.1|AE004848_9 (AE004848) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/335 (99%), Positives = 334/335 (99%)
Sequence:
ATGAGCGAACAGACGCCCGAACAACCGAGCACCACGCCCAACCCGGCGCTCCAGCGCCAGCGCGCGAGCCAG
TTGGCCCAGGCCCTGCGCAGCGAACTGCAGAAAGCCCTGATCGGCCAGGGCGCGGTGATCGACGATGTGCTC
ACCGCGTTGCTCGCCGGCGGCCACGTGTTGGTGGAAGGCGTGCCGGGGCTCGGCAAGACCCTGCTGGTACGC
GCCCTGGCGCGCTGCTTCGACGGCGGCTTCGCGCGCATCCAGTTCACCCCCGACCTGATGCCCAGCGACGTC
ACCGGCCACGCCGTATACGACCTCGCCAGCGAGCAGTTCAAGCTGCGCAAGGGGCCGGTGTTCACCCACCTG
CTGCTGGCGGACGAGATCAACCGCGCGCCGGCCAAGACCCAGGCCGCCCTGCTGGAAGTGATGCAGGAGCGC
CAGGTCACCCTGGAAGGACGCGCCCTGCCGGTGCCGCAGCCGTTCATGGTGCTGGCGACGCAGAACCCGATC
GAGCAGGAAGGCACCTATCCGCTGCCGGAAGCCGAACTCGACCGCTTCATGCTCAAGCTGCGCATCGATTAC
CCGGCCGAAGCCGAGGAACAGACCCTGGTGCGCCAGGTGACCCGCTCCGCGCGCAGCGACATGCTCGACGTG
GCCAACCTGCGGCCGCTGCTGAAGGACAAGGACGTTCTCGCCCTGCAGCGGATCGCCAGCGACCTGCCGATC
GACGACCAGGTCCTCGACTATGCCGTGCGCCTGGCCCGCACCACCCGCAACTGGCCGGGCCTGGCCCTCGGC
GCCGGACCTCGCGCGTCGATCGCCCTGGTCCGTTGCGGCCGGGCGCGGGCGCTGCTGCGCGGCGGCGAGTTC
GTGGTGCCGGACGACATCAAGGGCTGTGCCCTGGCGGTCCTGCGCCATCGGGTCCGGCTGTCTCCGGAGCTG
GACATCGAGGGGCTGTCGGTGGACCAGGTCCTGCAACAGTTGCTCGACCAGGTACCGGCCCCCCGCGTATGA
Translation:
MSEQTPEQPSTTPNPALQRQRASQLAQALRSELQKALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVR
ALARCFDGGFARIQFTPDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQER
QVTLEGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPAEAEEQTLVRQVTRSARSDMLDV
ANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIALVRCGRARALLRGGEF
VVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPAPRV*
AnnotationID:2171GeneID:2163
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative methanol dehydrogenase regulatory protein
Cell Localization:(1) Cytoplasmic
Synonyms:moxR
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0714
Secondary Functional Category(ies):two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57784.1| (AE016871) moxR protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 349

 Score =  522 bits (1344), Expect = e-147
 Identities = 269/335 (80%), Positives = 296/335 (88%)

>emb|CAD73573.1| (BX294139) probable regulatory protein [Pirellula sp.]
          Length = 379

 Score =  310 bits (793), Expect = 1e-83
 Identities = 158/328 (48%), Positives = 219/328 (66%), Gaps = 1/328 (0%)

>dbj|BAA16745.1| (D90900) MorR protein [Synechocystis sp. PCC 6803]
          Length = 314

 Score =  297 bits (760), Expect = 7e-80
 Identities = 144/310 (46%), Positives = 210/310 (67%)






 
Structural Features:
COG0714, MoxR-like ATPases
CD-Length = 329 residues,  99.7% aligned
Score =  264 bits (675), Expect = 1e-71
Identities = 151/329 (45%), Positives = 211/329 (64%), Gaps = 8/329 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4329




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2163_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2163
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3701
                           PA4322_tr
                           translation of PA4322
                           335
                           99.40
                           99.70
                           0
                           1669.0
     

     
     
114156
                           gb|AAG07710.1|AE004848_9
                           (AE004848) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           335
                           99.40
                           99.70
                           0
                           1669.0
     

     
     
114157
                           gb|AAO57784.1|
                           (AE016871) moxR protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           78.22
                           85.67
                           14
                           1350.0
     

     
     
114160
                           emb|CAB90929.1|
                           (AL939114) putative regulatory protein [Streptomyces coelicolor A3(2)]
                           337
                           46.29
                           62.01
                           10
                           766.0
     

     
     
114159
                           dbj|BAC72770.1|
                           (AP005041) putative regulatory protein [Streptomyces avermitilis MA-4680]
                           337
                           46.29
                           62.90
                           9
                           776.0
     

     






      

          
GC ORFID: 45165How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4322Glimmer Score: 

          
Start: 4278428Stop: 4279435

          
Length: 1008


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4322 translation of PA4322Homolog Bit Score 647.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1950 (ORF: BLASTX 530.0), t_PA3070 (ORF: BLASTX 256.0), psyr_15may02_Scaffold1_revised_gene663 (ORF: BLASTX 249.0), t_PA2875 (ORF: BLASTX 247.0), psyr_15may02_Scaffold1_revised_gene1040 (ORF: BLASTX 234.0), t_PA4322 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACAGACGCCCGAACAACCGAGCACCACGCCCAACCCGGCGCTCCAGCGCCAGCGCGCGAGCCAG 
TTGGCCCAGGCCCTGCGCAGCGAACTGCAGAAAGCCCTGATCGGCCAGGGCGCGGTGATCGACGATGTGCTC 
ACCGCGTTGCTCGCCGGCGGCCACGTGTTGGTGGAAGGCGTGCCGGGGCTCGGCAAGACCCTGCTGGTACGC 
GCCCTGGCGCGCTGCTTCGACGGCGGCTTCGCGCGCATCCAGTTCACCCCCGACCTGATGCCCAGCGACGTC 
ACCGGCCACGCCGTATACGACCTCGCCAGCGAGCAGTTCAAGCTGCGCAAGGGGCCGGTGTTCACCCACCTG 
CTGCTGGCGGACGAGATCAACCGCGCGCCGGCCAAGACCCAGGCCGCCCTGCTGGAAGTGATGCAGGAGCGC 
CAGGTCACCCTGGAAGGACGCGCCCTGCCGGTGCCGCAGCCGTTCATGGTGCTGGCGACGCAGAACCCGATC 
GAGCAGGAAGGCACCTATCCGCTGCCGGAAGCCGAACTCGACCGCTTCATGCTCAAGCTGCGCATCGATTAC 
CCGGCCGAAGCCGAGGAACAGACCCTGGTGCGCCAGGTGACCCGCTCCGCGCGCAGCGACATGCTCGACGTG 
GCCAACCTGCGGCCGCTGCTGAAGGACAAGGACGTTCTCGCCCTGCAGCGGATCGCCAGCGACCTGCCGATC 
GACGACCAGGTCCTCGACTATGCCGTGCGCCTGGCCCGCACCACCCGCAACTGGCCGGGCCTGGCCCTCGGC 
GCCGGACCTCGCGCGTCGATCGCCCTGGTCCGTTGCGGCCGGGCGCGGGCGCTGCTGCGCGGCGGCGAGTTC 
GTGGTGCCGGACGACATCAAGGGCTGTGCCCTGGCGGTCCTGCGCCATCGGGTCCGGCTGTCTCCGGAGCTG 
GACATCGAGGGGCTGTCGGTGGACCAGGTCCTGCAACAGTTGCTCGACCAGGTACCGGCCCCCCGCGTATGA