ViewGene
Locus Name:
GeneID:
Location:

GeneID:2162
TrivialName: PA14_11590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11590
PAO1 Ortholog Locus:PA4040
Sequence Length:1008
Protein Length:335
Start: 1003503
Stop: 1002496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07427.1|AE004820_12 (AE004820) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/335 (97%), Positives = 330/335 (98%)
Sequence:
ATGCGCCTGGGTAGCATAGCGGGACTCGCTCTCGCCCTGGCGCTGTTCGCCGGAACCTTGGGCTGGCTCCAC
GAACGGCAGCAACCGCCCGCGCAACCGCCTGCGAGCCGCGCCTGGCTGCCAGGGCTGAAACCGCACCAGGTG
ACCGCCCTGTGCATCGCCACCCCCGGCCAACCGACGATCCGCGCCAGGCGCGATGGCAAGGACTGGACGCTC
GCCAGCAAGGACGGCTATCCCGCCTCGGGGGAAACCATCAGGCAGCTGTTGCGCAGCCTGGCCGACGCGCGC
CTGCTAGAGGAAAAGAGCGCCTCGCCGGAAAACCGCGAGCGCATGGGACTCTCCGACCAGGGCAAGGGCCAG
GCCAGCCGGATCACCCTGGAGCGCGGCGACGCGCCGCCGCTGGTTCTGTTGCTGGGCAAGCGCACCTCGCAG
GGCGGGCAGTTGGTCAGGCAGGCCGACGATGAGCGGGCCTGGCTGATCGACCGAACGGTCGGCCTGCCGGTC
AACGACCTGGCCCTGCTCGACCCTCGGTTGACCGACCTGCCATTCGAACAGTTGCGCGAGCTGACCCTGTCC
TATGGCAACGGTGTACGGCTGAACATTTCCCGAGCCAGCGAAAAGGACGATGGCATCCGCCTGCGACAGTTC
CCATCCAGGCCACAGTTGATGGGCGAGGCGGAAGCCGAGCAGGCCGCACGCCTGTTCGCTGCGCTCAGGCTG
CTGGAGGTCGCGCCGGCCAAGGCCTCGCGGCAAAAACCGCTGCTGACCTTCACGCTCAAGAGTTTCGCCGGC
GGCACGCTGCAGGGCCAGCTTCTGGAACTGGAGCGCCAGTACTGGTTGCAACTGACCGACAGCAAGGGCTTC
GCCGACGGGCAGGTCTCAGCCGTCAAGGGTTGGCGCTACCGCGTGGAGGGTCTGAGTCCGGATACCGCTCCC
GCGCCCCAGCTACCCAAGGCATCGCCGGTGAAGAAAAGCAAGCCGGCCAAGCCCTCGTCGCCCAAGTGCTGA
Translation:
MRLGSIAGLALALALFAGTLGWLHERQQPPAQPPASRAWLPGLKPHQVTALCIATPGQPTIRARRDGKDWTL
ASKDGYPASGETIRQLLRSLADARLLEEKSASPENRERMGLSDQGKGQASRITLERGDAPPLVLLLGKRTSQ
GGQLVRQADDERAWLIDRTVGLPVNDLALLDPRLTDLPFEQLRELTLSYGNGVRLNISRASEKDDGIRLRQF
PSRPQLMGEAEAEQAARLFAALRLLEVAPAKASRQKPLLTFTLKSFAGGTLQGQLLELERQYWLQLTDSKGF
ADGQVSAVKGWRYRVEGLSPDTAPAPQLPKASPVKKSKPAKPSSPKC*
AnnotationID:2170GeneID:2162
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 16:04:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4327




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21473




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2162
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3699
                           PA4040_tr
                           translation of PA4040
                           335
                           97.61
                           98.50
                           0
                           1670.0
     

     
     
114154
                           gb|AAG07427.1|AE004820_12
                           (AE004820) hypothetical protein PA4040 [Pseudomonas aeruginosa PAO1]
                           335
                           97.61
                           98.50
                           0
                           1670.0
     

     
     
3700
                           PA3669_tr
                           translation of PA3669
                           343
                           39.35
                           54.51
                           25
                           570.0
     

     
     
114155
                           gb|AAG07057.1|AE004786_9
                           (AE004786) hypothetical protein PA3669 [Pseudomonas aeruginosa PAO1]
                           343
                           39.35
                           54.51
                           25
                           570.0
     

     






      

          
GC ORFID: 45164How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4040Glimmer Score: 

          
Start: 3950434Stop: 3951441

          
Length: 1008


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4040 translation of PA4040Homolog Bit Score 647.0

          
Other Homologs:  t_PA3669 (ORF: BLASTX 223.0), t_PA4040 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGGGTAGCATAGCGGGACTCGCTCTCGCCCTGGCGCTGTTCGCCGGAACCTTGGGCTGGCTCCAC 
GAACGGCAGCAACCGCCCGCGCAACCGCCTGCGAGCCGCGCCTGGCTGCCAGGGCTGAAACCGCACCAGGTG 
ACCGCCCTGTGCATCGCCACCCCCGGCCAACCGACGATCCGCGCCAGGCGCGATGGCAAGGACTGGACGCTC 
GCCAGCAAGGACGGCTATCCCGCCTCGGGGGAAACCATCAGGCAGCTGTTGCGCAGCCTGGCCGACGCGCGC 
CTGCTAGAGGAAAAGAGCGCCTCGCCGGAAAACCGCGAGCGCATGGGACTCTCCGACCAGGGCAAGGGCCAG 
GCCAGCCGGATCACCCTGGAGCGCGGCGACGCGCCGCCGCTGGTTCTGTTGCTGGGCAAGCGCACCTCGCAG 
GGCGGGCAGTTGGTCAGGCAGGCCGACGATGAGCGGGCCTGGCTGATCGACCGAACGGTCGGCCTGCCGGTC 
AACGACCTGGCCCTGCTCGACCCTCGGTTGACCGACCTGCCATTCGAACAGTTGCGCGAGCTGACCCTGTCC 
TATGGCAACGGTGTACGGCTGAACATTTCCCGAGCCAGCGAAAAGGACGATGGCATCCGCCTGCGACAGTTC 
CCATCCAGGCCACAGTTGATGGGCGAGGCGGAAGCCGAGCAGGCCGCACGCCTGTTCGCTGCGCTCAGGCTG 
CTGGAGGTCGCGCCGGCCAAGGCCTCGCGGCAAAAACCGCTGCTGACCTTCACGCTCAAGAGTTTCGCCGGC 
GGCACGCTGCAGGGCCAGCTTCTGGAACTGGAGCGCCAGTACTGGTTGCAACTGACCGACAGCAAGGGCTTC 
GCCGACGGGCAGGTCTCAGCCGTCAAGGGTTGGCGCTACCGCGTGGAGGGTCTGAGTCCGGATACCGCTCCC 
GCGCCCCAGCTACCCAAGGCATCGCCGGTGAAGAAAAGCAAGCCGGCCAAGCCCTCGTCGCCCAAGTGCTGA