ViewGene
Locus Name:
GeneID:
Location:

GeneID:2161
TrivialName: PA14_23810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23810
PAO1 Ortholog Locus:PA3116
Sequence Length:1011
Protein Length:336
Start: 2068904
Stop: 2069914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06504.1|AE004736_1 (AE004736) probable aspartate-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 335/336 (99%), Positives = 335/336 (99%)
Sequence:
ATGTCCCAGCCCCTCAATGTCGCAGTCGTAGGCGCCACCGGATCGGTTGGCGAGGCTCTGGTCGGTCTCCTC
GACGAACGCGACTTCCCGCTTCATCGTTTGCACCTGCTGGCCAGCGCCGAGTCGGCCGGGCAGCGCATGGGT
TTCGCCGAAAGCAGCCTGCGCGTCGGCGATGTCGATAGCTTCGATTTTTCCAGTGTCGGCCTGGCCTTCTTC
GCCGCGGCAGCCGAGGTGTCGCGTGCCCATGCCGAGCGCGCCCGCGCGGCGGGTTGTTCGGTGATCGACCTG
AGCGGCGCCCTGGAACCGAGCGTCGCACCGCCGGTCATGGTTTCGGTGAATGCCGAACGCCTGGCCTCGCAA
GCGGCGCCGTTCCTTTTGTCCAGTCCTTGCGCCGTAGCCGCCGAACTGTGCGAAGTGCTGGCGCCACTACTG
GCCACGCTGGATTGCCGGCAACTGAACCTGACAGCCTGCCTCTCCGTCTCCAGCCTGGGGCGCGAAGGGGTG
AAGGAACTCGCCCGGCAGACCGCCGAACTGCTCAATGCGCGCCCCCTGGAGCCGCGTCTCTTCGACCGCCAG
ATCGCCTTCAACCTGCTGGCGCAGGTCGGCGCGGTGGATGGCGAGGGGCACAGCGCGATCGAGCGGCGCATC
TTCGCGGAGGTGCAGGCCTTGCTTGGCGAGCGTATCGGACCGTTGAACGTTACCTGCATCCAGGCGCCGGTA
TTCTTCGGCGACAGCCTCAGCGTGACCCTGCAGTGCGCGGAACCGGTGGACCTGGCCGCGGTGACGCGGGTC
CTCGATGCGACGAAAGGTATCGAATGGGTCGGCGAGGGCGATTATCCGACGGTGGTCGGCGATGCCCTCGGC
CAGGACGAGACCTATGTCGGCCGGGTGAGGGCGGGGCAGGCTGATCCCTGTCAGGTCAATTTGTGGATTGTG
TCTGATAATGTGCGAAAAGGTGCCGCGCTGAATGCCGTGCTCCTGGGTGAGTTGTTGATAAAACACTATCTG
TAA
Translation:
MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFF
AAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLL
ATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDGEGHSAIERRI
FAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVVGDALG
QDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL*
AnnotationID:2169GeneID:2161
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 13:01:30
Gene Name:
Confidence Code:3
GeneProduct:putative aspartate-semialdehyde dehydrogenase
Cell Localization:()
Synonyms:PA3116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0136
Secondary Functional Category(ies):
EC Number:1.2.1.11
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67607.1|AE016390_6 (AE016781) semialdehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 334

 Score =  371 bits (952), Expect = e-102
 Identities = 198/334 (59%), Positives = 246/334 (73%), Gaps = 2/334 (0%)








 
Structural Features:
COG0136, Asd, Aspartate-semialdehyde dehydrogenase 
[Amino acid transport and metabolism]
CD-Length = 334 residues, 100.0% aligned
Score =  294 bits (754), Expect = 1e-80
Identities = 134/337 (39%), Positives = 191/337 (56%), Gaps = 11/337 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4325




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21471




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32409




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2161_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2161
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3698
                           PA3116_tr
                           translation of PA3116
                           336
                           99.70
                           99.70
                           0
                           1670.0
     

     
     
114148
                           gb|AAG06504.1|AE004736_1
                           (AE004736) probable aspartate-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           336
                           99.70
                           99.70
                           0
                           1670.0
     

     
     
114149
                           gb|AAC23939.1|
                           (U93274) unknown [Pseudomonas aeruginosa]
                           336
                           99.40
                           99.70
                           0
                           1667.0
     

     
     
114150
                           gb|AAN67607.1|AE016390_6
                           (AE016781) semialdehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           336
                           58.92
                           73.21
                           2
                           950.0
     

     
     
114151
                           gb|AAO57287.1|
                           (AE016869) aspartate-semialdehyde dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           337
                           58.45
                           72.70
                           1
                           949.0
     

     






      

          
GC ORFID: 45163How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3116Glimmer Score: 

          
Start: 2885027Stop: 2884017

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3116 translation of PA3116Homolog Bit Score 647.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2622 (ORF: BLASTX 360.0), t_PA3116 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCAGCCCCTCAATGTCGCAGTCGTAGGCGCCACCGGATCGGTTGGCGAGGCTCTGGTCGGTCTCCTC 
GACGAACGCGACTTCCCGCTTCATCGTTTGCACCTGCTGGCCAGCGCCGAGTCGGCCGGGCAGCGCATGGGT 
TTCGCCGAAAGCAGCCTGCGCGTCGGCGATGTCGATAGCTTCGATTTTTCCAGTGTCGGCCTGGCCTTCTTC 
GCCGCGGCAGCCGAGGTGTCGCGTGCCCATGCCGAGCGCGCCCGCGCGGCGGGTTGTTCGGTGATCGACCTG 
AGCGGCGCCCTGGAACCGAGCGTCGCACCGCCGGTCATGGTTTCGGTGAATGCCGAACGCCTGGCCTCGCAA 
GCGGCGCCGTTCCTTTTGTCCAGTCCTTGCGCCGTAGCCGCCGAACTGTGCGAAGTGCTGGCGCCACTACTG 
GCCACGCTGGATTGCCGGCAACTGAACCTGACAGCCTGCCTCTCCGTCTCCAGCCTGGGGCGCGAAGGGGTG 
AAGGAACTCGCCCGGCAGACCGCCGAACTGCTCAATGCGCGCCCCCTGGAGCCGCGTCTCTTCGACCGCCAG 
ATCGCCTTCAACCTGCTGGCGCAGGTCGGCGCGGTGGATGGCGAGGGGCACAGCGCGATCGAGCGGCGCATC 
TTCGCGGAGGTGCAGGCCTTGCTTGGCGAGCGTATCGGACCGTTGAACGTTACCTGCATCCAGGCGCCGGTA 
TTCTTCGGCGACAGCCTCAGCGTGACCCTGCAGTGCGCGGAACCGGTGGACCTGGCCGCGGTGACGCGGGTC 
CTCGATGCGACGAAAGGTATCGAATGGGTCGGCGAGGGCGATTATCCGACGGTGGTCGGCGATGCCCTCGGC 
CAGGACGAGACCTATGTCGGCCGGGTGAGGGCGGGGCAGGCTGATCCCTGTCAGGTCAATTTGTGGATTGTG 
TCTGATAATGTGCGAAAAGGTGCCGCGCTGAATGCCGTGCTCCTGGGTGAGTTGTTGATAAAACACTATCTG 
TAA