ViewGene
Locus Name:
GeneID:
Location:

GeneID:2160
TrivialName: PA14_26270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26270
PAO1 Ortholog Locus:PA2921
Sequence Length:990
Protein Length:329
Start: 2292047
Stop: 2293036
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06309.1|AE004718_6 (AE004718) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 327/329 (99%), Positives = 327/329 (99%)
Sequence:
ATGATGACAACCTTTCGTTGTCACCTCGGTAAGCCCGTGAAACTCCACCAGTTGCAAGCCCTGGTCGCCAGT
GccgACGCcgGCGGCATCCGCGCCGCCGCCCGCGCCCTGGGGATTTCCCAGGCGGCCGTGACCCGCGCGCTG
CGCGAACTGGAAACCGAACAGCATCTGCCGCTGTTCGTCCGCACGCCCAGCGGCCTGACCTTCACCGAATAC
GGCAAGGCGCTGCTGATCCACGCCCGGCTGGTGCTCAAGCAACTGGAGCACGCGCAGGTCGAACTCGACCAC
CTGCGTGGCCAGGCCAGCGGCCGGCTGTGCATCGGGGTGACGCCTTGGGTGGCGCTGACCTTCCTCTCGGAG
GCGGTGCAGGCGTTCCGCGAGCGCATGCCGGAGGTGCGCCTGGAGCTTTTCGAAAGCCTGATGGCGGTGGCC
CAGCCATTGCTTCGCGACGGCAGCATGGATTTCGCCATCGGCCCGCTGCACGGCGCCCAGGCGGCCCAGGAA
TTCGCCTGCGAGAAGCTGCTCGACTACGACACCGCGGTGCTGGTCCGCCAGGGGCATCCGCTGGCGGGTTGC
GGCTCGATCCACGAGCTGCTGGAACAGGACTGGGCGTTGAACTACACCGGCGCCGGCCACGACGCCCTGATG
CGCGAGCTGTTCTGGCGCCACGGCGCCTTGATCGACGAGCGGCGCATCGTCCGTGCGCACTCCGTGGCGATC
CTGCAGACCCTGGTGGAGCAGGCCGACATGTGTACCTGGGTGCCGGCGATCATCGGCGCCGCCCCGCCGTTG
CTCGGCCGGGTGGTGCCGCTGGCGCTGCGGGAAACCTTCGAGCCACGGCGGCTGGGCATCATCACCCGGCGC
GGCGGCGCCCTCAGCAATCCGGCGCAATGCTTCGTCGAGTGCCTGCTGCAGGTGATCCGCCGCCACGCCCGC
TCGGCGAAGAAGGATGACCGGCGCCTGTTCGAAACCCTGCGCCTGCTAGTCTGA
Translation:
MMTTFRCHLGKPVKLHQLQALVASADAGGIRAAARALGISQAAVTRALRELETEQHLPLFVRTPSGLTFTEY
GKALLIHARLVLKQLEHAQVELDHLRGQASGRLCIGVTPWVALTFLSEAVQAFRERMPEVRLELFESLMAVA
QPLLRDGSMDFAIGPLHGAQAAQEFACEKLLDYDTAVLVRQGHPLAGCGSIHELLEQDWALNYTGAGHDALM
RELFWRHGALIDERRIVRAHSVAILQTLVEQADMCTWVPAIIGAAPPLLGRVVPLALRETFEPRRLGIITRR
GGALSNPAQCFVECLLQVIRRHARSAKKDDRRLFETLRLLV*
AnnotationID:2168GeneID:2160
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 08:08:18
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2921
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.0% aligned
Score =  123 bits (309), Expect = 3e-29
Identities = 87/300 (29%), Positives = 126/300 (42%), Gaps = 6/300 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4323




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21469




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36109




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2160_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2160
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3697
                           PA2921_tr
                           translation of PA2921
                           329
                           99.39
                           99.39
                           0
                           1670.0
     

     
     
114147
                           gb|AAG06309.1|AE004718_6
                           (AE004718) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           329
                           99.39
                           99.39
                           0
                           1670.0
     

     






      

          
GC ORFID: 45162How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2921Glimmer Score: 

          
Start: 2661878Stop: 2660889

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2921 translation of PA2921Homolog Bit Score 647.0

          
Other Homologs:  t_PA2921 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGACAACCTTTCGTTGTCACCTCGGTAAGCCCGTGAAACTCCACCAGTTGCAAGCCCTGGTCGCCAGT 
GccgACGCcgGCGGCATCCGCGCCGCCGCCCGCGCCCTGGGGATTTCCCAGGCGGCCGTGACCCGCGCGCTG 
CGCGAACTGGAAACCGAACAGCATCTGCCGCTGTTCGTCCGCACGCCCAGCGGCCTGACCTTCACCGAATAC 
GGCAAGGCGCTGCTGATCCACGCCCGGCTGGTGCTCAAGCAACTGGAGCACGCGCAGGTCGAACTCGACCAC 
CTGCGTGGCCAGGCCAGCGGCCGGCTGTGCATCGGGGTGACGCCTTGGGTGGCGCTGACCTTCCTCTCGGAG 
GCGGTGCAGGCGTTCCGCGAGCGCATGCCGGAGGTGCGCCTGGAGCTTTTCGAAAGCCTGATGGCGGTGGCC 
CAGCCATTGCTTCGCGACGGCAGCATGGATTTCGCCATCGGCCCGCTGCACGGCGCCCAGGCGGCCCAGGAA 
TTCGCCTGCGAGAAGCTGCTCGACTACGACACCGCGGTGCTGGTCCGCCAGGGGCATCCGCTGGCGGGTTGC 
GGCTCGATCCACGAGCTGCTGGAACAGGACTGGGCGTTGAACTACACCGGCGCCGGCCACGACGCCCTGATG 
CGCGAGCTGTTCTGGCGCCACGGCGCCTTGATCGACGAGCGGCGCATCGTCCGTGCGCACTCCGTGGCGATC 
CTGCAGACCCTGGTGGAGCAGGCCGACATGTGTACCTGGGTGCCGGCGATCATCGGCGCCGCCCCGCCGTTG 
CTCGGCCGGGTGGTGCCGCTGGCGCTGCGGGAAACCTTCGAGCCACGGCGGCTGGGCATCATCACCCGGCGC 
GGCGGCGCCCTCAGCAATCCGGCGCAATGCTTCGTCGAGTGCCTGCTGCAGGTGATCCGCCGCCACGCCCGC 
TCGGCGAAGAAGGATGACCGGCGCCTGTTCGAAACCCTGCGCCTGCTAGTCTGA