ViewGene
Locus Name:
GeneID:
Location:

GeneID:216
TrivialName: PA14_40350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40350
PAO1 Ortholog Locus:PA1866
Sequence Length:2277
Protein Length:758
Start: 3607432
Stop: 3605156
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05255.1|AE004612_9 (AE004612) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 754/758 (99%), Positives = 755/758 (99%)
Sequence:
ATGACTGAGCAGGGCGGCGAGGCGCTGTACCAGGTGGCGGTGCGCGCGCTTTGCGAGTTCAGCGCCAAGCGC
GGCGACCTCGACCTGCGCTTCACCCCGTCGCCCAGCGCCCTGGAAGGCATCGCCGGACATACCCTGGTGACC
TCCCGGCGCCCCGCTCACTACCAGCGCGAGGTGGCGCTGGACGGACGCTACCGTCACTTGCAGGTGCGCGGC
CGGGCGGATGGCTACGACCCGCAGGCGAACTGCCTGGAGGAAATCAAGACCCACCGCGGCGACCTCGCCCTG
CAACCGGCCAACCACCGGCACCTGCACTGGGCCCAGGCCAGGGTCTACGGCTGGCTGCTCTGCGCCGAACGG
AAGCTGGAGGAAGTCGAACTGGCGCTGGTCTACCTGGAGGTCGGCAGCCAGAAGGAGACCCGCTTCGTCGAG
CGGGTGCGGGCCGACGAGCTGCGGCTGTTCTTCGAGAGCCAGTGCCAGGCGTTTCTCGCCTGGGCCGAGCAG
GAACTGGCGCACCGCCAGCGGCGCGACCGCGAACTGGCCGCGTTACGCTTTCCCCACGCCGAATTCCGCCAC
GGCCAGCGGCAACTGGCGGAGGCGGTGTACAAGGCCGCCTCCGCCGGTTGTTGCCTGATGGCCCAGGCGCCG
ACCGGGATCGGCAAGACTATCGGCACGCTGTTCCCGCAACTCAAGGCGATGCCCGGGCAGCGCCTGGACCGG
CTGTTCTTCCTGGCCGCCAAGACCCCGGGCCGGGCCCTCGCGCTGCATGCCCTGCGCAGCCTGGAAGGGGAG
ACCGGCGGACTGCCGGTGCGGGTGCTGGAACTGGTGGCGCGGGACAAGGCCTGCGAGCACCCGGACAAGGCC
TGCCACGGCGAATCCTGTCCCCTGGCCCAGGGCTTCTACGAACGCCTGCCGGCGGCCCGCGCCGCCGCCGTG
GAGGCGCGCTGGCTGGACCAGGCGCGGTTGCGCGAGGTGGCGCTGGCGCACCGGGTCTGTCCCTACTACCTG
GGCCAGGAACTGGCGCGCTGGTGCGACCTGGCGGTGGGCGACTACAACTACTACTTCGACCTCGGCGCCATG
CTCCATGGCCTGGCCCAGGTCAACCAGTGGCGGGTGGCGGTACTGGTGGACGAGGCGCACAACCTGGTGGAG
CGCGGCCGGCGGATGTATTCCGCCGAACTCGACCAGGGCGATTTCCTCGGTGTGCGCAAGACCGCCCCGGAG
GCCCTGAGGAAACCGCTGGAGCGCATCCAGCGTGCCTGGAACGAACTGGGCAAGACCCAGGCGGACGACTAC
CAGGCCTACGACGAGCCTCCGCAGAAGCTGCTCCTGGCCTTGCAGAACGCGGTGGCGGCGATCAACGACCTG
CTCGCCGAGCAACCGCAGGCGCTGGAGCCGGCGTTGCAGGAGTTCTACTTCGCGATCCTGCAGTTCGGCCGT
CTCGCCGAGCTGTTCGGCGAGCATTCGCTGTTCGACATCGAGAAGCGCCCAGGCCGCAACGGCCGCAGCCTG
GCCCGGCTGTGCCTGCGCAACGTGGTGCCGGCGGCGTTTCTCGCCGAGCGCTTCGCCGCCAGCCGCTCCACC
GTGCTGTTCTCCGCTACCCTCGGGCCGCGCGACTATTACGCCGACCTGCTTGGCCTGCCGGCGGGCACGCCC
TGGCTGGAAGTGGACTCGCCATTCAGCGCCGAGCAACTGGAGGTGCACATACAGCGTCGGGTTTCCACGCGC
TATGCGCAGCGTCAGGCCTCCCTGGCGCCCATCGCGGCGATTCTCGGCGAGCAGTTTCGCCAGCGGCCGGGC
AACTACCTGGCCTTCTTCAGCAGCTTCGATTACTTGCAGCAGACGCTGGACGTCTTCCGCCAGGCATACCCG
TGGGTGCCGTGCTGGAGCCAGACGCGACGGATGGACGAGGCGGAGCGCCGGGCCTTCCTCGAACGCTTCGTC
GCGGGCGGCGAGGGCATCGGCTTCGCCGTGCTCGGCGGTGCCTTCGGCGAAGGCATCGACCTGCCTGGAGAG
CGCCTGATCGGCGCCTTCATCGCCACCCTCGGGTTGCCCCAGGTGAATCCGGTGAACGAGCAGATCCGCCTG
CGCATGCAGCGCCTGTTCGGTGACGGCTACGACTACACCTACCTGTATCCGGGACTGCAGAAGGTGGTCCAG
GCCGCCGGGAGGGTGATCCGCAGCCGCAGCGATCGCGGCGTGGTGCACCTGATCGACGACCGTTTCGCCCAG
GCCAGGGTGCGCCGGTTGCTACCGGGCTGGTGGCAACTGCGTTGA
Translation:
MTEQGGEALYQVAVRALCEFSAKRGDLDLRFTPSPSALEGIAGHTLVTSRRPAHYQREVALDGRYRHLQVRG
RADGYDPQANCLEEIKTHRGDLALQPANHRHLHWAQARVYGWLLCAERKLEEVELALVYLEVGSQKETRFVE
RVRADELRLFFESQCQAFLAWAEQELAHRQRRDRELAALRFPHAEFRHGQRQLAEAVYKAASAGCCLMAQAP
TGIGKTIGTLFPQLKAMPGQRLDRLFFLAAKTPGRALALHALRSLEGETGGLPVRVLELVARDKACEHPDKA
CHGESCPLAQGFYERLPAARAAAVEARWLDQARLREVALAHRVCPYYLGQELARWCDLAVGDYNYYFDLGAM
LHGLAQVNQWRVAVLVDEAHNLVERGRRMYSAELDQGDFLGVRKTAPEALRKPLERIQRAWNELGKTQADDY
QAYDEPPQKLLLALQNAVAAINDLLAEQPQALEPALQEFYFAILQFGRLAELFGEHSLFDIEKRPGRNGRSL
ARLCLRNVVPAAFLAERFAASRSTVLFSATLGPRDYYADLLGLPAGTPWLEVDSPFSAEQLEVHIQRRVSTR
YAQRQASLAPIAAILGEQFRQRPGNYLAFFSSFDYLQQTLDVFRQAYPWVPCWSQTRRMDEAERRAFLERFV
AGGEGIGFAVLGGAFGEGIDLPGERLIGAFIATLGLPQVNPVNEQIRLRMQRLFGDGYDYTYLYPGLQKVVQ
AAGRVIRSRSDRGVVHLIDDRFAQARVRRLLPGWWQLR*
AnnotationID:226GeneID:216
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:56
Gene Name:
Confidence Code:3
GeneProduct:putative DNA helicase
Cell Localization:()
Synonyms:PA1866
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1199
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO80962.1| (AE016950) helicase, putative [Enterococcus faecalis V583]
          Length = 793

 Score =  396 bits (1017), Expect = e-109
 Identities = 263/768 (34%), Positives = 382/768 (49%), Gaps = 34/768 (4%)








 
Structural Features:
COG1199, DinG, Rad3-related DNA helicases 
[Transcription / DNA replication, recombination, and repair]
CD-Length = 654 residues,  77.7% aligned
Score =  228 bits (582), Expect = 2e-60
Identities = 168/639 (26%), Positives = 240/639 (37%), Gaps = 78/639 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17577




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37050




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:216_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:216
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
377
                           PA1866_tr
                           translation of PA1866
                           758
                           99.47
                           99.60
                           0
                           3935.0
     

     
     
22141
                           gb|AAG05255.1|AE004612_9
                           (AE004612) hypothetical protein PA1866 [Pseudomonas aeruginosa PAO1]
                           758
                           99.47
                           99.60
                           0
                           3935.0
     

     
     
22142
                           gb|AAP76491.1|
                           (AY240957) Uvs006 [uncultured bacterium]
                           768
                           63.41
                           75.65
                           13
                           2565.0
     

     
     
22143
                           gb|AAN68447.1|AE016477_6
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           762
                           62.99
                           74.54
                           4
                           2492.0
     

     
     
22144
                           gb|AAO56526.1|
                           (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           763
                           62.90
                           73.91
                           7
                           2491.0
     

     






      

          
GC ORFID: 43218How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1866Glimmer Score: 

          
Start: 1346478Stop: 1348754

          
Length: 2277


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1866 translation of PA1866Homolog Bit Score 1520.0

          
Other Homologs:  t_PA1866 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAGCAGGGCGGCGAGGCGCTGTACCAGGTGGCGGTGCGCGCGCTTTGCGAGTTCAGCGCCAAGCGC 
GGCGACCTCGACCTGCGCTTCACCCCGTCGCCCAGCGCCCTGGAAGGCATCGCCGGACATACCCTGGTGACC 
TCCCGGCGCCCCGCTCACTACCAGCGCGAGGTGGCGCTGGACGGACGCTACCGTCACTTGCAGGTGCGCGGC 
CGGGCGGATGGCTACGACCCGCAGGCGAACTGCCTGGAGGAAATCAAGACCCACCGCGGCGACCTCGCCCTG 
CAACCGGCCAACCACCGGCACCTGCACTGGGCCCAGGCCAGGGTCTACGGCTGGCTGCTCTGCGCCGAACGG 
AAGCTGGAGGAAGTCGAACTGGCGCTGGTCTACCTGGAGGTCGGCAGCCAGAAGGAGACCCGCTTCGTCGAG 
CGGGTGCGGGCCGACGAGCTGCGGCTGTTCTTCGAGAGCCAGTGCCAGGCGTTTCTCGCCTGGGCCGAGCAG 
GAACTGGCGCACCGCCAGCGGCGCGACCGCGAACTGGCCGCGTTACGCTTTCCCCACGCCGAATTCCGCCAC 
GGCCAGCGGCAACTGGCGGAGGCGGTGTACAAGGCCGCCTCCGCCGGTTGTTGCCTGATGGCCCAGGCGCCG 
ACCGGGATCGGCAAGACTATCGGCACGCTGTTCCCGCAACTCAAGGCGATGCCCGGGCAGCGCCTGGACCGG 
CTGTTCTTCCTGGCCGCCAAGACCCCGGGCCGGGCCCTCGCGCTGCATGCCCTGCGCAGCCTGGAAGGGGAG 
ACCGGCGGACTGCCGGTGCGGGTGCTGGAACTGGTGGCGCGGGACAAGGCCTGCGAGCACCCGGACAAGGCC 
TGCCACGGCGAATCCTGTCCCCTGGCCCAGGGCTTCTACGAACGCCTGCCGGCGGCCCGCGCCGCCGCCGTG 
GAGGCGCGCTGGCTGGACCAGGCGCGGTTGCGCGAGGTGGCGCTGGCGCACCGGGTCTGTCCCTACTACCTG 
GGCCAGGAACTGGCGCGCTGGTGCGACCTGGCGGTGGGCGACTACAACTACTACTTCGACCTCGGCGCCATG 
CTCCATGGCCTGGCCCAGGTCAACCAGTGGCGGGTGGCGGTACTGGTGGACGAGGCGCACAACCTGGTGGAG 
CGCGGCCGGCGGATGTATTCCGCCGAACTCGACCAGGGCGATTTCCTCGGTGTGCGCAAGACCGCCCCGGAG 
GCCCTGAGGAAACCGCTGGAGCGCATCCAGCGTGCCTGGAACGAACTGGGCAAGACCCAGGCGGACGACTAC 
CAGGCCTACGACGAGCCTCCGCAGAAGCTGCTCCTGGCCTTGCAGAACGCGGTGGCGGCGATCAACGACCTG 
CTCGCCGAGCAACCGCAGGCGCTGGAGCCGGCGTTGCAGGAGTTCTACTTCGCGATCCTGCAGTTCGGCCGT 
CTCGCCGAGCTGTTCGGCGAGCATTCGCTGTTCGACATCGAGAAGCGCCCAGGCCGCAACGGCCGCAGCCTG 
GCCCGGCTGTGCCTGCGCAACGTGGTGCCGGCGGCGTTTCTCGCCGAGCGCTTCGCCGCCAGCCGCTCCACC 
GTGCTGTTCTCCGCTACCCTCGGGCCGCGCGACTATTACGCCGACCTGCTTGGCCTGCCGGCGGGCACGCCC 
TGGCTGGAAGTGGACTCGCCATTCAGCGCCGAGCAACTGGAGGTGCACATACAGCGTCGGGTTTCCACGCGC 
TATGCGCAGCGTCAGGCCTCCCTGGCGCCCATCGCGGCGATTCTCGGCGAGCAGTTTCGCCAGCGGCCGGGC 
AACTACCTGGCCTTCTTCAGCAGCTTCGATTACTTGCAGCAGACGCTGGACGTCTTCCGCCAGGCATACCCG 
TGGGTGCCGTGCTGGAGCCAGACGCGACGGATGGACGAGGCGGAGCGCCGGGCCTTCCTCGAACGCTTCGTC 
GCGGGCGGCGAGGGCATCGGCTTCGCCGTGCTCGGCGGTGCCTTCGGCGAAGGCATCGACCTGCCTGGAGAG 
CGCCTGATCGGCGCCTTCATCGCCACCCTCGGGTTGCCCCAGGTGAATCCGGTGAACGAGCAGATCCGCCTG 
CGCATGCAGCGCCTGTTCGGTGACGGCTACGACTACACCTACCTGTATCCGGGACTGCAGAAGGTGGTCCAG 
GCCGCCGGGAGGGTGATCCGCAGCCGCAGCGATCGCGGCGTGGTGCACCTGATCGACGACCGTTTCGCCCAG 
GCCAGGGTGCGCCGGTTGCTACCGGGCTGGTGGCAACTGCGTTGA