ViewGene
Locus Name:
GeneID:
Location:

GeneID:2159
TrivialName: PA14_38320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38320
PAO1 Ortholog Locus:PA2026
Sequence Length:1002
Protein Length:333
Start: 3415099
Stop: 3416100
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05414.1|AE004629_3 (AE004629) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/333 (99%), Positives = 333/333 (100%)
Sequence:
ATGTCCCGACCGCGTTTCCTTCCGGATAACTTCACCCTGGCGCTGATCGCCACCGTCCTTCTCGCCACTTTC
CTGCCCTGCAGCGGCCAGACCGCCGTGGTCTTCGAATGGGTGACCAACATCGGCATCGGCCTGCTGTTCTTC
CTCCACGGCGCCAAGCTGTCGCGCCAGGCGATCGTCGCCGGCATGACCCACTGGCGCCTGCACCTGCTGGTG
TTCGCCTGCACCTTCGTGATGTTCCCGCTGCTCGGCCTGGCGCTGAAACCGGCGCTGTCGCCGATGGTCACC
CCGGAGCTGTACCTCGGCATCCTGTTCCTCTGCGCCCTGCCGGCCACGGTGCAATCCTCCATCGCCTTCACC
TCGCTGGCGCGCGGCAACGTGCCGGCAGCGGTATGCAGCGCTTCCGTGTCGAGCCTGCTCGGCGTATTCCTC
ACCCCGCTGCTGGTCAAGCTGCTGCTCGGCGCCGAAGGCGAGACCGGCAACGCGCTGGACGCCATCGGCAAG
ATCACCCTACAACTGCTGGTACCCTTCATCGCCGGCCAGGTCCTGCGGCGCTGGATCGGCGCCTGGGTGGAG
CGCAACAAGCCGGTGCTACGCTATGTCGACCAGGGCTCGATCCTGCTGGTGGTCTACACCGCCTTCAGCGCC
GCGGTGATCCAGGGCCTGTGGCACGAAGTACCCTGGCTGGCGCTGCTCGGCCTGACCGTCGCCTGCTGCGTG
ATCCTCGCCCTGGCCCTGGTGCTGACCACGGTGCTGGCGCGACGCCTGGGCTTCAGCAAGGAAGACGAGATC
ACCATCGTCTTCTGCGGTTCGAAGAAGAGCCTGGCCACCGGCGTGCCCATGGCCAAGGTGCTGTTCGCCACC
AGTGCGGTGGGACCGATGGTGTTGCCGCTGATGCTGTTCCACCAGATCCAGCTGATGGTCTGCGCGGTGCTC
GCGCAACGCTACGCCAGGCGCCGCGACGACGCAGCGGCGGCGCTGGCCGAGGCCCCCTCGCGCTGA
Translation:
MSRPRFLPDNFTLALIATVLLATFLPCSGQTAVVFEWVTNIGIGLLFFLHGAKLSRQAIVAGMTHWRLHLLV
FACTFVMFPLLGLALKPALSPMVTPELYLGILFLCALPATVQSSIAFTSLARGNVPAAVCSASVSSLLGVFL
TPLLVKLLLGAEGETGNALDAIGKITLQLLVPFIAGQVLRRWIGAWVERNKPVLRYVDQGSILLVVYTAFSA
AVIQGLWHEVPWLALLGLTVACCVILALALVLTTVLARRLGFSKEDEITIVFCGSKKSLATGVPMAKVLFAT
SAVGPMVLPLMLFHQIQLMVCAVLAQRYARRRDDAAAALAEAPSR*
AnnotationID:2167GeneID:2159
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:46
Gene Name:
Confidence Code:3
GeneProduct:putative transporter, bile acid/Na+ symporter family
Cell Localization:()
Synonyms:yfeH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative cytochrome oxidase
Functional Category Confidence Code:5
COGs:COG0385
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68485.1|AE016481_1 (AE016784) transporter, bile acid/Na+ symporter family [Pseudomonas
           putida KT2440]
          Length = 333

 Score =  456 bits (1173), Expect = e-128
 Identities = 232/322 (72%), Positives = 263/322 (81%)

>gb|AAC75463.1| (AE000328) putative cytochrome oxidase [Escherichia coli K12]
          Length = 332

 Score =  375 bits (962), Expect = e-103
 Identities = 192/317 (60%), Positives = 232/317 (73%), Gaps = 1/317 (0%)

>gb|AAN29984.1|AE014407_7 (AE014407) sodium/bile acid symporter family [Brucella suis 1330]
          Length = 321

 Score =  350 bits (897), Expect = 9e-96
 Identities = 180/317 (56%), Positives = 232/317 (73%)







 
Structural Features:
COG0385, COG0385, Predicted Na+-dependent transporter
CD-Length = 319 residues, 100.0% aligned
Score =  258 bits (662), Expect = 5e-70
Identities = 141/332 (42%), Positives = 172/332 (51%), Gaps = 14/332 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4321




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21467




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32674




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2159_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2159
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3696
                           PA2026_tr
                           translation of PA2026
                           333
                           99.69
                           99.99
                           0
                           1670.0
     

     
     
114108
                           gb|AAG05414.1|AE004629_3
                           (AE004629) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           333
                           99.69
                           99.99
                           0
                           1670.0
     

     
     
114109
                           gb|AAN68485.1|AE016481_1
                           (AE016784) transporter, bile acid/Na+ symporter family [Pseudomonas putida KT2440]
                           337
                           69.13
                           78.33
                           8
                           1172.0
     

     
     
114112
                           emb|CAE37768.1|
                           (BX640430) putative exported protein [Bordetella parapertussis]
                           334
                           63.77
                           76.64
                           13
                           1110.0
     

     
     
114111
                           emb|CAE43063.1|
                           (BX640419) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           334
                           63.77
                           76.64
                           13
                           1111.0
     

     






      

          
GC ORFID: 45161How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2026Glimmer Score: 

          
Start: 1538811Stop: 1537810

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2026 translation of PA2026Homolog Bit Score 647.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3611 (ORF: BLASTX 248.0), t_PA2026 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGACCGCGTTTCCTTCCGGATAACTTCACCCTGGCGCTGATCGCCACCGTCCTTCTCGCCACTTTC 
CTGCCCTGCAGCGGCCAGACCGCCGTGGTCTTCGAATGGGTGACCAACATCGGCATCGGCCTGCTGTTCTTC 
CTCCACGGCGCCAAGCTGTCGCGCCAGGCGATCGTCGCCGGCATGACCCACTGGCGCCTGCACCTGCTGGTG 
TTCGCCTGCACCTTCGTGATGTTCCCGCTGCTCGGCCTGGCGCTGAAACCGGCGCTGTCGCCGATGGTCACC 
CCGGAGCTGTACCTCGGCATCCTGTTCCTCTGCGCCCTGCCGGCCACGGTGCAATCCTCCATCGCCTTCACC 
TCGCTGGCGCGCGGCAACGTGCCGGCAGCGGTATGCAGCGCTTCCGTGTCGAGCCTGCTCGGCGTATTCCTC 
ACCCCGCTGCTGGTCAAGCTGCTGCTCGGCGCCGAAGGCGAGACCGGCAACGCGCTGGACGCCATCGGCAAG 
ATCACCCTACAACTGCTGGTACCCTTCATCGCCGGCCAGGTCCTGCGGCGCTGGATCGGCGCCTGGGTGGAG 
CGCAACAAGCCGGTGCTACGCTATGTCGACCAGGGCTCGATCCTGCTGGTGGTCTACACCGCCTTCAGCGCC 
GCGGTGATCCAGGGCCTGTGGCACGAAGTACCCTGGCTGGCGCTGCTCGGCCTGACCGTCGCCTGCTGCGTG 
ATCCTCGCCCTGGCCCTGGTGCTGACCACGGTGCTGGCGCGACGCCTGGGCTTCAGCAAGGAAGACGAGATC 
ACCATCGTCTTCTGCGGTTCGAAGAAGAGCCTGGCCACCGGCGTGCCCATGGCCAAGGTGCTGTTCGCCACC 
AGTGCGGTGGGACCGATGGTGTTGCCGCTGATGCTGTTCCACCAGATCCAGCTGATGGTCTGCGCGGTGCTC 
GCGCAACGCTACGCCAGGCGCCGCGACGACGCAGCGGCGGCGCTGGCCGAGGCCCCCTCGCGCTGA