ViewGene

Locus Name:
GeneID:
Location:

GeneID:2157
TrivialName: PA14_54540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54540
PAO1 Ortholog Locus:PA0754
Sequence Length:984
Protein Length:327
Start: 4835069
Stop: 4836052
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04143.1|AE004510_7 (AE004510) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/327 (100%), Positives = 327/327 (100%)
Sequence:
ATGATGATGAAACTGTCTTTTCGTCCCCTCGCCTTGGTTGCCGCCGGCCTGCTGCTGGCCGGCGCCGCCGTG
GCCGAACCCAAGCGTCCCGAATGCATCGCCCCGGCGTCCCCCGGCGGCGGTTTCGACCTCACCTGCAAGCTG
GCGCAGAGCGCCCTGGTCGAGGCCAAGCTGCTGAGCAAGCCGATGCGTGTCACCTACATGCCCGGCGGCGTC
GGCGCGGTCGCCTATAACGCGGTGGTCGCCCAACGCCCGGGCGACGCCGGCACCATCACCGCCTTCTCCAGC
GGCTCGCTGCTGAACCTGGCCCAGGGCAAGTTCGGCCGCTTCGACGAGAACGCGGTGAAATGGCTGGCCGCC
ATCGGCACCAGCTACGGCGCCATCGCGGTGCGCACCGATTCGCCCTACAAGAACCTCGACGACCTGGTGAAG
GCGCTCAAGGCCGACCCGAGCAAGGTGGTGATCGGCTCCGGCGGCACCGTCGGCAGCCAGGACTGGATGCAG
ACCGCGCTGATCGCCAAGGCCGCCGGGATCAATCCGCGCGACCTGCGCTACGTGGCCCTGGAAGGCGGCGGC
GAGATCGCCACCGCGCTGCTCGGCGGGCACATCCAGGTCGGCAGCACCGACATTTCCGACTCCATGCCGCAC
ATCCTCAGCGGCGACATGCGCCTGCTCGCGGTGTTCTCCGAAGAACGCCTGCCGGAGGCGGCGATGGCCAAC
ATCCCCACCGCCAAGGAACAGGGCTACGACATCGTCTGGCCGGTAGTTCGCGGGTTCTACCTCGGGCCGAAG
GTCAGCGACGAAGACTACGCCTGGTGGAAGAACGCCTTCGACCAACTGCTGGCCTCCGAGGACTTCGCCAAG
CTGCGCGACCAGCGCGAGCTGTTCCCCTTCGCCATGACCGGCGAGGAACTCGACGGCTACGTGAAGCAGCAG
GTCCAGCAGTACAAGCAACTGGCCAAGGACTTCGGCCTGATCCAGTAA
Translation:
MMMKLSFRPLALVAAGLLLAGAAVAEPKRPECIAPASPGGGFDLTCKLAQSALVEAKLLSKPMRVTYMPGGV
GAVAYNAVVAQRPGDAGTITAFSSGSLLNLAQGKFGRFDENAVKWLAAIGTSYGAIAVRTDSPYKNLDDLVK
ALKADPSKVVIGSGGTVGSQDWMQTALIAKAAGINPRDLRYVALEGGGEIATALLGGHIQVGSTDISDSMPH
ILSGDMRLLAVFSEERLPEAAMANIPTAKEQGYDIVWPVVRGFYLGPKVSDEDYAWWKNAFDQLLASEDFAK
LRDQRELFPFAMTGEELDGYVKQQVQQYKQLAKDFGLIQ*
AnnotationID:2165GeneID:2157
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0754
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3181
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3181, Uncharacterized protein conserved in bacteria [Function unknown]
    CD-Length = 319 residues, 100.0% aligned
    Score =  305 bits (783), Expect = 9e-84
Genomic Context:
Comment:
ReferenceID:4317
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21463
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2157

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3693 PA0754_tr translation of PA0754 327 99.99 99.99 0 1670.0
114082 gb|AAG04143.1|AE004510_7 (AE004510) hypothetical protein PA0754 [Pseudomonas aeruginosa PAO1] 327 99.99 99.99 0 1670.0
114083 gb|AAN67040.1|AE016333_1 (AE016779) tricarboxylate transport protein TctC, putative [Pseudomonas putida KT2440] 328 85.97 90.54 3 1445.0
114084 gb|AAO57688.1| (AE016871) TctC protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 327 83.48 90.51 2 1429.0
114085 emb|CAE15555.1| (BX571869) TctC protein [Photorhabdus luminescens subsp. laumondii TTO1] 331 59.51 77.64 9 1052.0
GC ORFID: 45159How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0754Glimmer Score:
Start: 118838Stop: 117855
Length: 984
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0754 translation of PA0754Homolog Bit Score 647.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2599 (ORF: BLASTX 552.0), t_PA0754 (ORF: GLIMMER)
GC ORF Sequence
ATGATGATGAAACTGTCTTTTCGTCCCCTCGCCTTGGTTGCCGCCGGCCTGCTGCTGGCCGGCGCCGCCGTG
GCCGAACCCAAGCGTCCCGAATGCATCGCCCCGGCGTCCCCCGGCGGCGGTTTCGACCTCACCTGCAAGCTG
GCGCAGAGCGCCCTGGTCGAGGCCAAGCTGCTGAGCAAGCCGATGCGTGTCACCTACATGCCCGGCGGCGTC
GGCGCGGTCGCCTATAACGCGGTGGTCGCCCAACGCCCGGGCGACGCCGGCACCATCACCGCCTTCTCCAGC
GGCTCGCTGCTGAACCTGGCCCAGGGCAAGTTCGGCCGCTTCGACGAGAACGCGGTGAAATGGCTGGCCGCC
ATCGGCACCAGCTACGGCGCCATCGCGGTGCGCACCGATTCGCCCTACAAGAACCTCGACGACCTGGTGAAG
GCGCTCAAGGCCGACCCGAGCAAGGTGGTGATCGGCTCCGGCGGCACCGTCGGCAGCCAGGACTGGATGCAG
ACCGCGCTGATCGCCAAGGCCGCCGGGATCAATCCGCGCGACCTGCGCTACGTGGCCCTGGAAGGCGGCGGC
GAGATCGCCACCGCGCTGCTCGGCGGGCACATCCAGGTCGGCAGCACCGACATTTCCGACTCCATGCCGCAC
ATCCTCAGCGGCGACATGCGCCTGCTCGCGGTGTTCTCCGAAGAACGCCTGCCGGAGGCGGCGATGGCCAAC
ATCCCCACCGCCAAGGAACAGGGCTACGACATCGTCTGGCCGGTAGTTCGCGGGTTCTACCTCGGGCCGAAG
GTCAGCGACGAAGACTACGCCTGGTGGAAGAACGCCTTCGACCAACTGCTGGCCTCCGAGGACTTCGCCAAG
CTGCGCGACCAGCGCGAGCTGTTCCCCTTCGCCATGACCGGCGAGGAACTCGACGGCTACGTGAAGCAGCAG
GTCCAGCAGTACAAGCAACTGGCCAAGGACTTCGGCCTGATCCAGTAA