ViewGene
Locus Name:
GeneID:
Location:

GeneID:2156
TrivialName: PA14_05260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05260
PAO1 Ortholog Locus:PA0402
Sequence Length:1005
Protein Length:334
Start: 460429
Stop: 459425
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03791.1|AE004477_8 (AE004477) aspartate carbamoyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 334/334 (100%), Positives = 334/334 (100%)
Sequence:
ATGCCGACAGACGCCAAGCGCCCGCTGCAGCTCAACGACCAGGGCCAGCTGCGCCACTTCATCTCGCTCGAC
GGATTGCCCCGCGAGCTGCTCACCGAAATCCTCGATACCGCCGATTCCTTCCTGGAGGTCGGCGCCCGCGCG
GTGAAAAAGGTCCCGCTGCTGCGCGGCAAGACCGTCTGCAACGTGTTCTTCGAGAACTCCACGCGCACCCGC
ACCACCTTCGAGCTGGCCGCCCAGCGGCTGTCGGCCGACGTGATCAGCCTGAACGTATCCACCTCTTCCACC
AGCAAGGGCGAGACGCTCACCGACACCCTGCGCAACCTGGAGGCGATGGCCGCCGACATGTTCGTGGTGCGC
CACAGCGACTCGGGCGCGGCGCACTTCATCGCCGAGCACGTCAGCCCCAACGTGGCGGTGATCAACGGCGGC
GACGGCCGCCACGCGCACCCCACCCAGGGGATGCTCGACATGCTGACCATCCGCCGGCACAAAGGGAACTTC
GAGCAGCTATCGGTGGCGATCGTCGGCGATATCCTGCATTCGCGAGTAGCCCGTTCGAACATGCTGGCGCTC
AAGACCCTGGGTTGCCCGGACATCCGCGTGATCGCCCCGCGCACCCTGTTGCCGATCGGACTGGAAGAGCAG
TACGGCGTGCGCGTGTTCACCAACGCCGACGAAGGCCTGAAGGACGTCGACGTGGTGATCATGCTGCGCCTG
CAACGCGAGCGCATGCAGGGTGGCCTGCTACCCAGCGAGGGCGAGTTCTTCAAGCTCTACGGCCTGACCGAG
AAGCGCCTGAAGCTGGCCAAGCCGGATGCCATCGTCATGCACCCTGGCCCGATCAACCGTGGCGTGGAGATC
GAGTCGGCGGTGGCCGACGGTGCCCAGTCGGTGATCCTCAACCAGGTCACCTACGGCATCGCCATCCGCATG
GCGGTGCTGTCCATGGCCATGAGCGGCCAGAACACCCAACGCCAGCTGGAACAGGAGGACGCCGAATGA
Translation:
MPTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTR
TTFELAAQRLSADVISLNVSTSSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGG
DGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARSNMLALKTLGCPDIRVIAPRTLLPIGLEEQ
YGVRVFTNADEGLKDVDVVIMLRLQRERMQGGLLPSEGEFFKLYGLTEKRLKLAKPDAIVMHPGPINRGVEI
ESAVADGAQSVILNQVTYGIAIRMAVLSMAMSGQNTQRQLEQEDAE*
AnnotationID:2164GeneID:2156
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:16
Gene Name:pyrB
Confidence Code:2
GeneProduct:aspartate carbamoyltransferase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0540, COG0078
Secondary Functional Category(ies):Amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4315




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17043




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA0402_CDS.cgi


    		




 
URL:

















    ReferenceID:21461




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2156
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3692
                           PA0402_tr
                           translation of PA0402
                           334
                           99.99
                           99.99
                           0
                           1672.0
     

     
     
114026
                           gb|AAG03791.1|AE004477_8
                           (AE004477) aspartate carbamoyltransferase [Pseudomonas aeruginosa PAO1]
                           334
                           99.99
                           99.99
                           0
                           1672.0
     

     
     
114027
                           gb|AAA25976.1|
                           (L19649) 'aspartate transcarbamoylase' [Pseudomonas aeruginosa]
                           334
                           99.70
                           99.70
                           0
                           1666.0
     

     
     
114028
                           gb|AAN70564.1|AE016699_5
                           (AE016792) aspartate carbamoyltransferase [Pseudomonas putida KT2440]
                           335
                           89.25
                           94.02
                           2
                           1501.0
     

     
     
114029
                           gb|AAD15279.1|
                           (M97253) aspartate carbamoyltransferase [Pseudomonas putida]
                           335
                           88.95
                           94.02
                           2
                           1501.0
     

     






      

          
GC ORFID: 45158How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0402Glimmer Score: 

          
Start: 6261771Stop: 6260767

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0402 translation of PA0402Homolog Bit Score 648.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3714 (ORF: BLASTX 580.0), t_PA0402 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGACAGACGCCAAGCGCCCGCTGCAGCTCAACGACCAGGGCCAGCTGCGCCACTTCATCTCGCTCGAC 
GGATTGCCCCGCGAGCTGCTCACCGAAATCCTCGATACCGCCGATTCCTTCCTGGAGGTCGGCGCCCGCGCG 
GTGAAAAAGGTCCCGCTGCTGCGCGGCAAGACCGTCTGCAACGTGTTCTTCGAGAACTCCACGCGCACCCGC 
ACCACCTTCGAGCTGGCCGCCCAGCGGCTGTCGGCCGACGTGATCAGCCTGAACGTATCCACCTCTTCCACC 
AGCAAGGGCGAGACGCTCACCGACACCCTGCGCAACCTGGAGGCGATGGCCGCCGACATGTTCGTGGTGCGC 
CACAGCGACTCGGGCGCGGCGCACTTCATCGCCGAGCACGTCAGCCCCAACGTGGCGGTGATCAACGGCGGC 
GACGGCCGCCACGCGCACCCCACCCAGGGGATGCTCGACATGCTGACCATCCGCCGGCACAAAGGGAACTTC 
GAGCAGCTATCGGTGGCGATCGTCGGCGATATCCTGCATTCGCGAGTAGCCCGTTCGAACATGCTGGCGCTC 
AAGACCCTGGGTTGCCCGGACATCCGCGTGATCGCCCCGCGCACCCTGTTGCCGATCGGACTGGAAGAGCAG 
TACGGCGTGCGCGTGTTCACCAACGCCGACGAAGGCCTGAAGGACGTCGACGTGGTGATCATGCTGCGCCTG 
CAACGCGAGCGCATGCAGGGTGGCCTGCTACCCAGCGAGGGCGAGTTCTTCAAGCTCTACGGCCTGACCGAG 
AAGCGCCTGAAGCTGGCCAAGCCGGATGCCATCGTCATGCACCCTGGCCCGATCAACCGTGGCGTGGAGATC 
GAGTCGGCGGTGGCCGACGGTGCCCAGTCGGTGATCCTCAACCAGGTCACCTACGGCATCGCCATCCGCATG 
GCGGTGCTGTCCATGGCCATGAGCGGCCAGAACACCCAACGCCAGCTGGAACAGGAGGACGCCGAATGA