ViewGene

Locus Name:
GeneID:
Location:

GeneID:2155
TrivialName: PA14_42030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42030
PAO1 Ortholog Locus:PA1740
Sequence Length:999
Protein Length:332
Start: 3750017
Stop: 3749019
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05129.1|AE004600_5 (AE004600) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 328/332 (98%), Positives = 329/332 (99%)
Sequence:
ATGATGAGACGACAGGCTTCCGTGTTGCTGCTGGTATCCATGGTATCGGCGACCGTCTTGCCGGTTTTCGCC
CGTGCGCCGGGCGAGCGCGAACCGTCCTGCGCCGCGACGAGCATCGTTCTGCCAGCGGGGGCCCGGTATCCC
AACGGCATCGCCCATGCCGCCGATGGAACGCTGTACGTCGGCCTGGTCACCAGCGGGCGCATCCTGCGCAAG
CCTCCCGGGGGCGAGTGGGAAACCTTCTTCGCCGGCAGCCCGGCGATCTTCGCTGCCACCGCGCTGCGGCTG
GACGAGTCGCGTGGCCTGCTCTGGGGCAATTCGCCGGACTTCCTACCCGCTGGCCGGCGCCGGCCGCATGGG
GTGTTCGCCCTGGATCTCGCGACCGGTGCCGTGCGCCGATATCTGACCCTGCCCGGCGACGGGATGGGTAAC
GATCTCGCGGTGGCGCCGGACGGAACGGTCTACCTGAGCGAAACCCGGGATGGCAGCCTGATGCGGCTGCGG
CCCGGGGAACCGGCGTTCCAGGTGTTGCTGCGCGACAGCCGCCTGGCCGGCCCCGGCGGGCTGGGCGCGGCG
GGCATCGTCCGGGTGGACGACGACACCCTGCTGGTCGGCAACTTCGGTAGCGGGGCGATCCATGTCGTCGAA
GGGGTCGCCACGCGTCCGCGGCTGCGCGAGATGGAGCTGCCCCGAACGCTGGAGAATCCGGACGGCATGGCG
CTGGCTCCGGACGGCTCGCTGATCGTGCTGGAGAACGCCATCCGCAGCGGCGCCGGCAAGGTGCTGCGGATC
GCCGAGCCGCTCGCCGCCGGGCGGCGCGGCATCGAAGTGATACGCGAGGGCCTGGAGTCGCCGGTCAACCTG
ACCGTCACCGGACAGGGCTGCGCCTATGTCAGCGAGTCACGCATTCGCCACCGCCTGTTGCCGGGGCGCGAG
GGCGAGGTGCCGGCGCATTTCCTGATCCATCGGCTGCCCCTGGATGCGGCCGGGGGCCGTTGA
Translation:
MMRRQASVLLLVSMVSATVLPVFARAPGEREPSCAATSIVLPAGARYPNGIAHAADGTLYVGLVTSGRILRK
PPGGEWETFFAGSPAIFAATALRLDESRGLLWGNSPDFLPAGRRRPHGVFALDLATGAVRRYLTLPGDGMGN
DLAVAPDGTVYLSETRDGSLMRLRPGEPAFQVLLRDSRLAGPGGLGAAGIVRVDDDTLLVGNFGSGAIHVVE
GVATRPRLREMELPRTLENPDGMALAPDGSLIVLENAIRSGAGKVLRIAEPLAAGRRGIEVIREGLESPVNL
TVTGQGCAYVSESRIRHRLLPGREGEVPAHFLIHRLPLDAAGGR*
AnnotationID:2163GeneID:2155
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1740
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4313
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21459
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37138
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2155_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2155

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3691 PA1740_tr translation of PA1740 332 98.79 99.09 0 1671.0
114025 gb|AAG05129.1|AE004600_5 (AE004600) hypothetical protein PA1740 [Pseudomonas aeruginosa PAO1] 332 98.79 99.09 0 1671.0
GC ORFID: 45157How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1740Glimmer Score:
Start: 1203892Stop: 1204890
Length: 999
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1740 translation of PA1740Homolog Bit Score 648.0
Other Homologs: t_PA1740 (ORF: GLIMMER)
GC ORF Sequence
ATGATGAGACGACAGGCTTCCGTGTTGCTGCTGGTATCCATGGTATCGGCGACCGTCTTGCCGGTTTTCGCC
CGTGCGCCGGGCGAGCGCGAACCGTCCTGCGCCGCGACGAGCATCGTTCTGCCAGCGGGGGCCCGGTATCCC
AACGGCATCGCCCATGCCGCCGATGGAACGCTGTACGTCGGCCTGGTCACCAGCGGGCGCATCCTGCGCAAG
CCTCCCGGGGGCGAGTGGGAAACCTTCTTCGCCGGCAGCCCGGCGATCTTCGCTGCCACCGCGCTGCGGCTG
GACGAGTCGCGTGGCCTGCTCTGGGGCAATTCGCCGGACTTCCTACCCGCTGGCCGGCGCCGGCCGCATGGG
GTGTTCGCCCTGGATCTCGCGACCGGTGCCGTGCGCCGATATCTGACCCTGCCCGGCGACGGGATGGGTAAC
GATCTCGCGGTGGCGCCGGACGGAACGGTCTACCTGAGCGAAACCCGGGATGGCAGCCTGATGCGGCTGCGG
CCCGGGGAACCGGCGTTCCAGGTGTTGCTGCGCGACAGCCGCCTGGCCGGCCCCGGCGGGCTGGGCGCGGCG
GGCATCGTCCGGGTGGACGACGACACCCTGCTGGTCGGCAACTTCGGTAGCGGGGCGATCCATGTCGTCGAA
GGGGTCGCCACGCGTCCGCGGCTGCGCGAGATGGAGCTGCCCCGAACGCTGGAGAATCCGGACGGCATGGCG
CTGGCTCCGGACGGCTCGCTGATCGTGCTGGAGAACGCCATCCGCAGCGGCGCCGGCAAGGTGCTGCGGATC
GCCGAGCCGCTCGCCGCCGGGCGGCGCGGCATCGAAGTGATACGCGAGGGCCTGGAGTCGCCGGTCAACCTG
ACCGTCACCGGACAGGGCTGCGCCTATGTCAGCGAGTCACGCATTCGCCACCGCCTGTTGCCGGGGCGCGAG
GGCGAGGTGCCGGCGCATTTCCTGATCCATCGGCTGCCCCTGGATGCGGCCGGGGGCCGTTGA