ViewGene
Locus Name:
GeneID:
Location:

GeneID:2152
TrivialName: PA14_08310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08310
PAO1 Ortholog Locus:
Sequence Length:1053
Protein Length:350
Start: 712461
Stop: 713513
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04035.1|AE004500_1 (AE004500) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/350 (88%), Positives = 330/350 (94%)
Sequence:
ATGACTTGGTATTCCAGTGGCACCGTAGCGGTGACCGCAAATAGCCCGACCGTTACCGGTACTGGCACACAG
TTCTCGTCCAATGCCCGGGTCGGCGATGCATTTCGTGGCCCCGATGGTTGTTGGTACGAGGTCACAAACGTC
GCCAGTTCGACGGTCATCTCGATCAAACCCAACTACCAGGGCAGCACGGCCAGCGGCCAGCCCTATGCAGTG
GCGCCGATTCTGGGCTACGACAAGGACCTATCAGATCGTTTCAACCAGATTGCGATGGACTGGGGGGCGACC
CTTGCGGGCATAAAGCCGTGGGCGATAGCGTCTACCGGTTCGCAGGCGCAGGCTGACATGGGGATCACCGAA
GTTGGCCGTGCTATCAATGGAGCCTCTACCGTAGGCAATGCATTGGGGTTTTTGGGAGGTGTTTCCAAGACC
CAAGCCCCCATGGCCCTGGATATGGACACGGTGAACGAAAGCGGATGGTTCTCGATAACCCCCAATACTTAC
AACGTGCCTCTCGGAAACAACAATATCAGCGGTGTGAACGGCCATGTCGCTCTGTCGATGGTATTCGACGCC
AGTACCCGCTATCAGCTGTTCTTCGTGAGAAATACCAACCTCCCAGAGGTTTGGTACAGGAGCTGTACCAAT
GGAACCTGGAAGGAATGGGTCAGGTTTTATACGACAGACAATATCGTGGGGACCGTAACGAGGCGACTTGTT
ACGGGTAAGCCCACCGGGGCTGTGATGGAGAGCGGGACAACTTCCAACGGCTGGTACGTTCGCTTTGCGGAT
GGTACCCAGATGGCAGCGGCAAGATCCGAACCGGGCCTTTCGTTTGGAGCTAACGTGATACAGCTACCAGCT
GCCTTCGTTACGGGCTTCAATACCGGGGTGACCTGCAATTGGATTCCCTCCAGCGGATGGCCTGCCACTGCA
GGGCAGGGGGTTCGTGGAGCCTATCTCAACGGTAGCAGCTCTGTTTCTTTCGCGACGGCGCAGGCACTGGGG
GCTAACGACACCATTACGGTGATGGCTGTGGGGAGGTGGTACTGA
Translation:
MTWYSSGTVAVTANSPTVTGTGTQFSSNARVGDAFRGPDGCWYEVTNVASSTVISIKPNYQGSTASGQPYAV
APILGYDKDLSDRFNQIAMDWGATLAGIKPWAIASTGSQAQADMGITEVGRAINGASTVGNALGFLGGVSKT
QAPMALDMDTVNESGWFSITPNTYNVPLGNNNISGVNGHVALSMVFDASTRYQLFFVRNTNLPEVWYRSCTN
GTWKEWVRFYTTDNIVGTVTRRLVTGKPTGAVMESGTTSNGWYVRFADGTQMAAARSEPGLSFGANVIQLPA
AFVTGFNTGVTCNWIPSSGWPATAGQGVRGAYLNGSSSVSFATAQALGANDTITVMAVGRWY*
AnnotationID:2160GeneID:2152
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4307




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2152
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3686
                           PA0646_tr
                           translation of PA0646
                           350
                           88.57
                           94.28
                           0
                           1673.0
     

     
     
113975
                           gb|AAG04035.1|AE004500_1
                           (AE004500) hypothetical protein PA0646 [Pseudomonas aeruginosa PAO1]
                           350
                           88.57
                           94.28
                           0
                           1673.0
     

     
     
113976
                           dbj|BAB03222.1|
                           (AB046379) tail fiber protein [Pseudomonas aeruginosa]
                           401
                           47.13
                           58.85
                           86
                           811.0
     

     
     
3687
                           PA0643_tr
                           translation of PA0643
                           382
                           41.88
                           54.97
                           51
                           658.0
     

     
     
113977
                           gb|AAG04032.1|AE004499_11
                           (AE004499) hypothetical protein PA0643 [Pseudomonas aeruginosa PAO1]
                           382
                           41.88
                           54.97
                           51
                           658.0
     

     






      

          
GC ORFID: 45154How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0646Glimmer Score: 

          
Start: 6513804Stop: 6514856

          
Length: 1053


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0646 translation of PA0646Homolog Bit Score 649.0

          
Other Homologs:  t_PA0643 (ORF: BLASTX 245.0)

          
GC ORF Sequence

           
ATGACTTGGTATTCCAGTGGCACCGTAGCGGTGACCGCAAATAGCCCGACCGTTACCGGTACTGGCACACAG 
TTCTCGTCCAATGCCCGGGTCGGCGATGCATTTCGTGGCCCCGATGGTTGTTGGTACGAGGTCACAAACGTC 
GCCAGTTCGACGGTCATCTCGATCAAACCCAACTACCAGGGCAGCACGGCCAGCGGCCAGCCCTATGCAGTG 
GCGCCGATTCTGGGCTACGACAAGGACCTATCAGATCGTTTCAACCAGATTGCGATGGACTGGGGGGCGACC 
CTTGCGGGCATAAAGCCGTGGGCGATAGCGTCTACCGGTTCGCAGGCGCAGGCTGACATGGGGATCACCGAA 
GTTGGCCGTGCTATCAATGGAGCCTCTACCGTAGGCAATGCATTGGGGTTTTTGGGAGGTGTTTCCAAGACC 
CAAGCCCCCATGGCCCTGGATATGGACACGGTGAACGAAAGCGGATGGTTCTCGATAACCCCCAATACTTAC 
AACGTGCCTCTCGGAAACAACAATATCAGCGGTGTGAACGGCCATGTCGCTCTGTCGATGGTATTCGACGCC 
AGTACCCGCTATCAGCTGTTCTTCGTGAGAAATACCAACCTCCCAGAGGTTTGGTACAGGAGCTGTACCAAT 
GGAACCTGGAAGGAATGGGTCAGGTTTTATACGACAGACAATATCGTGGGGACCGTAACGAGGCGACTTGTT 
ACGGGTAAGCCCACCGGGGCTGTGATGGAGAGCGGGACAACTTCCAACGGCTGGTACGTTCGCTTTGCGGAT 
GGTACCCAGATGGCAGCGGCAAGATCCGAACCGGGCCTTTCGTTTGGAGCTAACGTGATACAGCTACCAGCT 
GCCTTCGTTACGGGCTTCAATACCGGGGTGACCTGCAATTGGATTCCCTCCAGCGGATGGCCTGCCACTGCA 
GGGCAGGGGGTTCGTGGAGCCTATCTCAACGGTAGCAGCTCTGTTTCTTTCGCGACGGCGCAGGCACTGGGG 
GCTAACGACACCATTACGGTGATGGCTGTGGGGAGGTGGTACTGA