ViewGene
Locus Name:
GeneID:
Location:

GeneID:2150
TrivialName: PA14_69370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69370
PAO1 Ortholog Locus:PA5253
Sequence Length:1059
Protein Length:352
Start: 6188314
Stop: 6187256
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08638.1|AE004937_10 (AE004937) alginate regulatory protein AlgP [Pseudomonas aeruginosa PAO1]
Identities = 343/352 (97%), Positives = 344/352 (97%)
Sequence:
ATGTCGGCCAACAAGAAGCCCGTCACCACCCCCTTGCACCTGTTGCAGCAACTTTCCCACAGCCTTGTCGAG
CACCTGGAAGGTGCGTGCAAACAAGCGCTGGTCGATTCGGAAAAGCTCCTGGCCAAACTTGAAAAGCAACGT
GGCAAAGCCCAGGAAAAACTGCACAAGGCTCGCACCAAGCTGCAGGATGCTGCCAAGGCCGGCAAGACCAAG
GCACAGGCCAAGGCGCGCGAGACCATCAGCGACCTGGAAGAAGCGTTGGATACCCTGAAGGCCCGGCAGGCG
GACACCCGTACCTACATCGTCGGCCTCAAGCGTGACGTACAGGAAAGCCTCAAGCTGGCGCAGGGTGTCGGC
AAGGTGAAGGAAGCTGCTGGCAAGGCTCTGGAGAGCCGCAAGGCGAAACCCGCGACCAAACCTGCTGCGAAG
GCGGCAGCCAAGCCTGCGATGAAAACCGTAGCGGCGAAGCCTGCGGCCAAGCCGGCTGCGAAACCGGCTGCG
AAACCGGCGGCCAAGCCTGCGGCGAAAACCGCGGCAGCGAAGCCCGCAGCCAAGCCGGCAGCGAAGCCTGTG
GCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGCGAAGCCT
GTGGCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGTGAAG
CCTGTGGCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGCG
AAGCCTGTGGCGAAACCGGCGGCCAAGCCTGTGGCGAAACCCGCGGCCGCGAAGCCTGCAGCCAAGCCGGCT
GCGAAGCCTGCGGCGAAACCGGTGGCCAAGCCTGCGGCAAAACCCGTAGCCGCGAAACCTGCCGCAGCCAAG
CCCGCCACCGCTCCTGCTGCGAAGCCTGCGGCGACTCCCAGCGCCCCGGCAGCCGCCTCCAGCGCTGCTTCC
GCAACGCCTGCCGCGGGCAGCAACGGCGCCGCCCCGACCAGCGCCTCCTAA
Translation:
MSANKKPVTTPLHLLQQLSHSLVEHLEGACKQALVDSEKLLAKLEKQRGKAQEKLHKARTKLQDAAKAGKTK
AQAKARETISDLEEALDTLKARQADTRTYIVGLKRDVQESLKLAQGVGKVKEAAGKALESRKAKPATKPAAK
AAAKPAMKTVAAKPAAKPAAKPAAKPAAKPAAKTAAAKPAAKPAAKPVAKPAAKPAAKTAAAKPAAKPAAKP
VAKPAAKPAAKTAAAKPAAKPAVKPVAKPAAKPAAKTAAAKPAAKPAAKPVAKPAAKPVAKPAAAKPAAKPA
AKPAAKPVAKPAAKPVAAKPAAAKPATAPAAKPAATPSAPAAASSAASATPAAGSNGAAPTSAS*
AnnotationID:2158GeneID:2150
AnnotatorUID: diggins
Modification Date/Time: 2004-10-18 12:12:26
Gene Name:algP
Confidence Code:1
GeneProduct:alginate regulatory protein AlgP
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65827.1|AE016211_5 (AE016774) alginate regulatory protein AlgP [Pseudomonas putida
           KT2440]
          Length = 329

 Score =  399 bits (1025), Expect = e-110
 Identities = 242/340 (71%), Positives = 261/340 (76%), Gaps = 25/340 (7%)

>gb|AAO53690.1| (AE016856) alginate regulatory protein AlgR3 [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 318

 Score =  352 bits (902), Expect = 3e-96
 Identities = 223/359 (62%), Positives = 244/359 (67%), Gaps = 48/359 (13%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21449




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34828




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2150_cdd.html


    		




 
URL:

















    ReferenceID:35729




  
Author/Investigator(s):
        Konyecsni WM, Deretic V.





  
Title:
        DNA sequence and expression analysis of algP and algQ, components of the multigene system transcriptionally regulating mucoidy in Pseudomonas aeruginosa: algP contains multiple direct repeats.




  
PubMed:
        2110144


MedLine:
        




    
Source:
J Bacteriol. 1990 May;172(5):2511-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2110144









           
Homologs By Global Alignment 

           

       



     
Gene ID:2150
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3683
                           PA5253_tr
                           translation of PA5253
                           352
                           97.44
                           97.72
                           0
                           1674.0
     

     
     
113834
                           gb|AAG08638.1|AE004937_10
                           (AE004937) alginate regulatory protein AlgP [Pseudomonas aeruginosa PAO1]
                           352
                           97.44
                           97.72
                           0
                           1674.0
     

     
     
113835
                           gb|AAA72068.1|
                           (M32077) alginate regulatory protein P [Pseudomonas aeruginosa]
                           352
                           96.59
                           96.87
                           0
                           1659.0
     

     
     
113836
                           gb|AAA25703.1|
                           (M57551) transcription regulatory protein [Pseudomonas aeruginosa]
                           352
                           94.60
                           94.88
                           12
                           1591.0
     

     
     
113837
                           gb|AAA25724.1|
                           (M30145) alginate regulatory protein AlgR3 [Pseudomonas aeruginosa]
                           352
                           92.89
                           93.18
                           12
                           1552.0
     

     






      

          
GC ORFID: 45152How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5253Glimmer Score: 

          
Start: 5452001Stop: 5450943

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5253 translation of PA5253Homolog Bit Score 649.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4073 (ORF: BLASTX 345.0), t_PA5060 (ORF: BLASTX 216.0), t_PA5060 (ORF: BLASTX 214.0), t_PA5253 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGCCAACAAGAAGCCCGTCACCACCCCCTTGCACCTGTTGCAGCAACTTTCCCACAGCCTTGTCGAG 
CACCTGGAAGGTGCGTGCAAACAAGCGCTGGTCGATTCGGAAAAGCTCCTGGCCAAACTTGAAAAGCAACGT 
GGCAAAGCCCAGGAAAAACTGCACAAGGCTCGCACCAAGCTGCAGGATGCTGCCAAGGCCGGCAAGACCAAG 
GCACAGGCCAAGGCGCGCGAGACCATCAGCGACCTGGAAGAAGCGTTGGATACCCTGAAGGCCCGGCAGGCG 
GACACCCGTACCTACATCGTCGGCCTCAAGCGTGACGTACAGGAAAGCCTCAAGCTGGCGCAGGGTGTCGGC 
AAGGTGAAGGAAGCTGCTGGCAAGGCTCTGGAGAGCCGCAAGGCGAAACCCGCGACCAAACCTGCTGCGAAG 
GCGGCAGCCAAGCCTGCGATGAAAACCGTAGCGGCGAAGCCTGCGGCCAAGCCGGCTGCGAAACCGGCTGCG 
AAACCGGCGGCCAAGCCTGCGGCGAAAACCGCGGCAGCGAAGCCCGCAGCCAAGCCGGCAGCGAAGCCTGTG 
GCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGCGAAGCCT 
GTGGCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGTGAAG 
CCTGTGGCGAAACCGGCGGCCAAGCCCGCGGCGAAAACCGCAGCCGCGAAGCCCGCAGCCAAGCCGGCGGCG 
AAGCCTGTGGCGAAACCGGCGGCCAAGCCTGTGGCGAAACCCGCGGCCGCGAAGCCTGCAGCCAAGCCGGCT 
GCGAAGCCTGCGGCGAAACCGGTGGCCAAGCCTGCGGCAAAACCCGTAGCCGCGAAACCTGCCGCAGCCAAG 
CCCGCCACCGCTCCTGCTGCGAAGCCTGCGGCGACTCCCAGCGCCCCGGCAGCCGCCTCCAGCGCTGCTTCC 
GCAACGCCTGCCGCGGGCAGCAACGGCGCCGCCCCGACCAGCGCCTCCTAA