ViewGene
Locus Name:
GeneID:
Location:

GeneID:215
TrivialName: PA14_65080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65080
PAO1 Ortholog Locus:PA4928
Sequence Length:2244
Protein Length:747
Start: 5802277
Stop: 5800034
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08313.1|AE004906_1 (AE004906) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 740/747 (99%), Positives = 743/747 (99%)
Sequence:
ATGCAAGCCGCCAAGCCGCTGTTCGACTATCCCAAGTACTGGGCCGAGTGTTTCGGTCCGGCGCCCTTCCTG
CCTATGAGTAGGGAAGAGATGGATCAGCTCGGCTGGGACTCCTGCGACATCATCATCGTCACCGGCGATGCC
TACGTCGACCACCCGTCCTTCGGCATGGCCATCATCGGCCGCCTGCTGGAGGCCCAGGGGTTCCGCGTCGGC
ATCATCGCCCAGCCGGACTGGCAGTCGAAGGACGACTTCATGAAGCTCGGCGAGCCGAACCTGTTCTTCGGC
GTGGCGGCCGGCAACATGGACTCGATGATCAACCGCTACACCGCGGACAAGAAGGTCCGTTCCGACGACGCC
TACACCCCCGGCGGCCTGGCCGGCAAGCGCCCGGACCGCGCCAGCCTGGTCTACAGCCAGCGCTGCAAGGAG
GCCTACAGCCATGTGCCGGTGATCCTCGGCGGGATCGAGGCCTCGTTGCGCCGTATCGCCCATTACGACTAC
TGGCAGGACAAGGTCCGCCGCTCGATCCTGATGGACGCCACGGCCGACATCCTGCTCTACGGCAACGCCGAG
CGTGCGGTGGTGGAAATCGCCCAGCGCCTGGCCCAGGGCGAACCGCTGAGCGCGATCACCGACGTGCGCGGC
ACCGCCTTCGTCCGTCGCGACACCCCGGAGGGCTGGTTCGAGATCGATTCCACGCGGATCGACCGGCCGGGC
AAGATCGACAAGATCATCAATCCCTACGTGAATACCCAGGACACTGCCGCCTGCGCCATCGAGCAGGAAAAG
GGCGTGCAGGAGGACCCGCAGGAAGCCAAGGTCGTGCAGTTGCTGGCGAACCCCAGGCTGACCCGGGAGAAG
ACCGTGATCCGCCTGCCGTCTTTCGAGAAGGTGCGCAACGACCCGGTGCTCTATGCCCACGCCAACCGCGTG
CTGCACCTGGAGACCAACCCGGGCAACGCCCGTGCCCTGGTGCAGAAGCACGGCGAAGTGGATGTCTGGTTC
AACCCGCCGCCCATTCCGATGAGCACCGAGGAAATGGACTACGTGTTCGGCATGCCCTATGCCCGCGTACCG
CACCCGGCCTACGGCAAGGCGAAGATTCCCGCCTACGAGATGATCCGCTTCTCGGTGAACATCATGCGTGGC
TGCTTCGGCGGCTGCACCTTCTGCTCGATCACCGAGCATGAGGGACGGATCATCCAGAACCGCTCGCACGAC
TCGATCATCCGCGAGATCGAGGAGATGCGCGACAAGGTGCCCGGCTTCACCGGCGTGGTCTCCGACCTTGGC
GGACCGACGGCGAACATGTACCGCATCGCCTGCAAGAGCCCGGACATCGAGCGGCACTGCCGCAAGCCGTCC
TGCGTGTTCCCCGGCATCTGCGAGAACCTCGATACCGACCACAGCTCGCTGATCGAGCTGTACCGCAAGGCC
CGGGCGCTGCCGGGGGTGAAGAAGATCCTGATCGCCTCCGGCCTGCGCTACGACCTCGCCGTCGAGTCGCCC
GAGTACGTCAAGGAACTGGTGACCCACCACGTCGGCGGCTACCTGAAGATCGCCCCGGAGCACACCGAGCGC
GGTCCGCTGGACAAGATGATGAAACCGGGGATCGGCACCTACGACCGCTTCAAGCAGATGTTCGAGAAGTTC
TCGAAGGAAGCCGGCAAGGAGCAGTACCTGATCCCGTACTTCATCGCCGCCCACCCCGGGACCACCGACGAA
GACATGATGAACCTGGCCCTGTGGCTCAAGCGCAACGGCTTCCGCGCCGACCAGGTCCAGGCGTTCTATCCC
TCGCCGATGGCCACCGCCACCGCGATGTATCACTCGGGCAAGAACCCGCTGCGCAAGGTCACCTACAAGAGC
GATGGCGTGACCATCGTCAAGAGCGACCAGCAGCGGCGCCTGCACAAGGCCTTCCTGCGCTACCACGACCCG
AAAGGCTGGCCGCTGCTGCGCGAGGCGCTGGAGCGGATGGGGCGCGCTGACCTGATCGGCAATGGCAAGCAC
CACCTGATCCCGACCTACCAGCCGGATACCGGCGAATACCAGAGCGCCCGGCGGAAGAACTCGACGCCGGCC
GGCAGCAAGAAGGCCGGCAAGCTGCTGACCCAGCATACCGGCCTGCCACCCCGCGCCAGCGACGGTGGCCAG
CCGTGGAGCAAGGGCCAGCAGAACAAGGCGGCGGCCTTCGCCAAGGGCAAGAAGAAGCCGCGCCAGCCGAAC
ATCCCGCGCTGA
Translation:
MQAAKPLFDYPKYWAECFGPAPFLPMSREEMDQLGWDSCDIIIVTGDAYVDHPSFGMAIIGRLLEAQGFRVG
IIAQPDWQSKDDFMKLGEPNLFFGVAAGNMDSMINRYTADKKVRSDDAYTPGGLAGKRPDRASLVYSQRCKE
AYSHVPVILGGIEASLRRIAHYDYWQDKVRRSILMDATADILLYGNAERAVVEIAQRLAQGEPLSAITDVRG
TAFVRRDTPEGWFEIDSTRIDRPGKIDKIINPYVNTQDTAACAIEQEKGVQEDPQEAKVVQLLANPRLTREK
TVIRLPSFEKVRNDPVLYAHANRVLHLETNPGNARALVQKHGEVDVWFNPPPIPMSTEEMDYVFGMPYARVP
HPAYGKAKIPAYEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSHDSIIREIEEMRDKVPGFTGVVSDLG
GPTANMYRIACKSPDIERHCRKPSCVFPGICENLDTDHSSLIELYRKARALPGVKKILIASGLRYDLAVESP
EYVKELVTHHVGGYLKIAPEHTERGPLDKMMKPGIGTYDRFKQMFEKFSKEAGKEQYLIPYFIAAHPGTTDE
DMMNLALWLKRNGFRADQVQAFYPSPMATATAMYHSGKNPLRKVTYKSDGVTIVKSDQQRRLHKAFLRYHDP
KGWPLLREALERMGRADLIGNGKHHLIPTYQPDTGEYQSARRKNSTPAGSKKAGKLLTQHTGLPPRASDGGQ
PWSKGQQNKAAAFAKGKKKPRQPNIPR*
AnnotationID:225GeneID:215
AnnotatorUID: diggins
Modification Date/Time: 2004-11-02 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative radical SAM domain protein
Cell Localization:()
Synonyms:ygiR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative putative Fe-S oxidoreductase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58356.1| (AE016873) radical SAM domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 771

 Score = 1357 bits (3513), Expect = 0.0
 Identities = 649/748 (86%), Positives = 698/748 (93%), Gaps = 6/748 (0%)

>gb|AAL22042.1| (AE008845) putative Fe-S oxidoreductase family 2 [Salmonella
           typhimurium LT2]
          Length = 723

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 483/709 (68%), Positives = 569/709 (80%), Gaps = 13/709 (1%)

>gb|AAO10594.1|AE016804_104 (AE016804) Putative Fe-S oxidoreductase family 2 [Vibrio vulnificus
           CMCP6]
          Length = 768

 Score =  991 bits (2563), Expect = 0.0
 Identities = 485/750 (64%), Positives = 580/750 (77%), Gaps = 29/750 (3%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:433




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17575




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35133




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:215_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:215
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
376
                           PA4928_tr
                           translation of PA4928
                           747
                           99.06
                           99.46
                           0
                           3946.0
     

     
     
22110
                           gb|AAG08313.1|AE004906_1
                           (AE004906) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           747
                           99.06
                           99.46
                           0
                           3946.0
     

     
     
22111
                           gb|AAN70441.1|AE016685_6
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           784
                           86.22
                           90.94
                           37
                           3633.0
     

     
     
22112
                           gb|AAO58356.1|
                           (AE016873) radical SAM domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           771
                           84.95
                           91.05
                           24
                           3526.0
     

     
     
22116
                           gb|AAN44538.1|AE015318_4
                           (AE015318) orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
                           758
                           65.43
                           77.70
                           30
                           2620.0
     

     






      

          
GC ORFID: 43217How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4928Glimmer Score: 

          
Start: 5065958Stop: 5063715

          
Length: 2244


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4928 translation of PA4928Homolog Bit Score 1524.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3445 (ORF: BLASTX 1358.0), t_PA4928 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCCGCCAAGCCGCTGTTCGACTATCCCAAGTACTGGGCCGAGTGTTTCGGTCCGGCGCCCTTCCTG 
CCTATGAGTAGGGAAGAGATGGATCAGCTCGGCTGGGACTCCTGCGACATCATCATCGTCACCGGCGATGCC 
TACGTCGACCACCCGTCCTTCGGCATGGCCATCATCGGCCGCCTGCTGGAGGCCCAGGGGTTCCGCGTCGGC 
ATCATCGCCCAGCCGGACTGGCAGTCGAAGGACGACTTCATGAAGCTCGGCGAGCCGAACCTGTTCTTCGGC 
GTGGCGGCCGGCAACATGGACTCGATGATCAACCGCTACACCGCGGACAAGAAGGTCCGTTCCGACGACGCC 
TACACCCCCGGCGGCCTGGCCGGCAAGCGCCCGGACCGCGCCAGCCTGGTCTACAGCCAGCGCTGCAAGGAG 
GCCTACAGCCATGTGCCGGTGATCCTCGGCGGGATCGAGGCCTCGTTGCGCCGTATCGCCCATTACGACTAC 
TGGCAGGACAAGGTCCGCCGCTCGATCCTGATGGACGCCACGGCCGACATCCTGCTCTACGGCAACGCCGAG 
CGTGCGGTGGTGGAAATCGCCCAGCGCCTGGCCCAGGGCGAACCGCTGAGCGCGATCACCGACGTGCGCGGC 
ACCGCCTTCGTCCGTCGCGACACCCCGGAGGGCTGGTTCGAGATCGATTCCACGCGGATCGACCGGCCGGGC 
AAGATCGACAAGATCATCAATCCCTACGTGAATACCCAGGACACTGCCGCCTGCGCCATCGAGCAGGAAAAG 
GGCGTGCAGGAGGACCCGCAGGAAGCCAAGGTCGTGCAGTTGCTGGCGAACCCCAGGCTGACCCGGGAGAAG 
ACCGTGATCCGCCTGCCGTCTTTCGAGAAGGTGCGCAACGACCCGGTGCTCTATGCCCACGCCAACCGCGTG 
CTGCACCTGGAGACCAACCCGGGCAACGCCCGTGCCCTGGTGCAGAAGCACGGCGAAGTGGATGTCTGGTTC 
AACCCGCCGCCCATTCCGATGAGCACCGAGGAAATGGACTACGTGTTCGGCATGCCCTATGCCCGCGTACCG 
CACCCGGCCTACGGCAAGGCGAAGATTCCCGCCTACGAGATGATCCGCTTCTCGGTGAACATCATGCGTGGC 
TGCTTCGGCGGCTGCACCTTCTGCTCGATCACCGAGCATGAGGGACGGATCATCCAGAACCGCTCGCACGAC 
TCGATCATCCGCGAGATCGAGGAGATGCGCGACAAGGTGCCCGGCTTCACCGGCGTGGTCTCCGACCTTGGC 
GGACCGACGGCGAACATGTACCGCATCGCCTGCAAGAGCCCGGACATCGAGCGGCACTGCCGCAAGCCGTCC 
TGCGTGTTCCCCGGCATCTGCGAGAACCTCGATACCGACCACAGCTCGCTGATCGAGCTGTACCGCAAGGCC 
CGGGCGCTGCCGGGGGTGAAGAAGATCCTGATCGCCTCCGGCCTGCGCTACGACCTCGCCGTCGAGTCGCCC 
GAGTACGTCAAGGAACTGGTGACCCACCACGTCGGCGGCTACCTGAAGATCGCCCCGGAGCACACCGAGCGC 
GGTCCGCTGGACAAGATGATGAAACCGGGGATCGGCACCTACGACCGCTTCAAGCAGATGTTCGAGAAGTTC 
TCGAAGGAAGCCGGCAAGGAGCAGTACCTGATCCCGTACTTCATCGCCGCCCACCCCGGGACCACCGACGAA 
GACATGATGAACCTGGCCCTGTGGCTCAAGCGCAACGGCTTCCGCGCCGACCAGGTCCAGGCGTTCTATCCC 
TCGCCGATGGCCACCGCCACCGCGATGTATCACTCGGGCAAGAACCCGCTGCGCAAGGTCACCTACAAGAGC 
GATGGCGTGACCATCGTCAAGAGCGACCAGCAGCGGCGCCTGCACAAGGCCTTCCTGCGCTACCACGACCCG 
AAAGGCTGGCCGCTGCTGCGCGAGGCGCTGGAGCGGATGGGGCGCGCTGACCTGATCGGCAATGGCAAGCAC 
CACCTGATCCCGACCTACCAGCCGGATACCGGCGAATACCAGAGCGCCCGGCGGAAGAACTCGACGCCGGCC 
GGCAGCAAGAAGGCCGGCAAGCTGCTGACCCAGCATACCGGCCTGCCACCCCGCGCCAGCGACGGTGGCCAG 
CCGTGGAGCAAGGGCCAGCAGAACAAGGCGGCGGCCTTCGCCAAGGGCAAGAAGAAGCCGCGCCAGCCGAAC 
ATCCCGCGCTGA