ViewGene
Locus Name:
GeneID:
Location:

GeneID:2149
TrivialName: PA14_67300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67300
PAO1 Ortholog Locus:PA5096
Sequence Length:969
Protein Length:322
Start: 6010572
Stop: 6009604
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08481.1|AE004922_6 (AE004922) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 320/322 (99%), Positives = 320/322 (99%)
Sequence:
ATGCGATACAAGAAGTCGATGTTGAGTGTTCTCTGTGCCCTCGGCCTGCTCGCCGCCGCGGCGGGCGCCCAG
GCGGAAGGCTGGTGCGAGTCCGGCAAGGCGGTGAAATTCGCCGGGCTGAACTGGGAGAGCGGGACGCTGCTC
ACCGAGCTGATGCAGTTCGTCCTGGCCAAGGGCTACGGCTGTACCACCGACAGCCTGCCGGGCAACTCGATC
ACCATGGAGCAGGCGCTGAGCACCAATGACATCCAGGTCTTCGCCGAGGAGTGGATCGGCCGCAGCGACGCC
TGGAACAAGGCCGCCGCGGCCGGCAAGGTGGTCGGCGTCGGCGAACCCATCGTCGGCGCGGTGGAGGGCTGG
TACGTGCCGCGCTACGTGATCGAGGGCGACCCGCAGCGCAAGCTCGAGGCGAAGGCGCCGAAGCTGCGCTCT
ATCGCCGACCTGGCGCAGTACGCCGAGGTCTTCCGCGACCCGGAAGAACCGGGCAAGGGGCGCTTCTACAAT
TGCCCGGCCGGCTGGACCTGCGAGCTGGAGAACAGCGAGATGCTGAAAAGCTACGGCCTGGAGGAGACGTTC
ACCAATTTCCGTCCGGGCACCGGCCCGGCACTGGACGCGGCGGTGCTGTCGAGCTATCGGCGCGGCGAGCCT
ATCCTGTTCTACTACTGGTCGCCGACGCCGCTGATGGGCCGTGCCGACCTGGTGCGCCTGGAGGAAAGGCCC
GGCGTCGACAAGCGCATCAGGATCCAGGTCGGCCTGTCGCGGACCTTCCACGACCAGGCGCCGGAGCTGGTG
GCGGTGCTGGAGAAGGTCAACCTGCCGGCGGAGCTGCTGAACAGCGACCTGGCGCGGATGGCCAAGGACAGG
ATCGATGCAGCGCGCCTGGCGCGCGAGTTCCTCAAGGAGCACCCCGAGGTCTGGCACGCCTGGGTCGACGAG
GACACGGCGAAGAAGATCGAAGCGGCACTCTGA
Translation:
MRYKKSMLSVLCALGLLAAAAGAQAEGWCESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSI
TMEQALSTNDIQVFAEEWIGRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDPQRKLEAKAPKLRS
IADLAQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVLSSYRRGEP
ILFYYWSPTPLMGRADLVRLEERPGVDKRIRIQVGLSRTFHDQAPELVAVLEKVNLPAELLNSDLARMAKDR
IDAARLAREFLKEHPEVWHAWVDEDTAKKIEAAL*
AnnotationID:2157GeneID:2149
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA5096, proX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2113,pfam04069
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58697.1| (AE016875) histidine transporter, periplasmic histidine-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 322

 Score =  520 bits (1339), Expect = e-147
 Identities = 242/322 (75%), Positives = 283/322 (87%)

>emb|CAC47279.1| (AL591791) HISTIDINE-BINDING PERIPLASMIC SIGNAL PEPTIDE PROTEIN
           [Sinorhizobium meliloti]
          Length = 344

 Score =  346 bits (888), Expect = 9e-95
 Identities = 168/334 (50%), Positives = 225/334 (67%), Gaps = 30/334 (8%)






 
Structural Features:
COG2113, ProX, ABC-type proline/glycine betaine transport systems, 
periplasmic components 
[Amino acid transport and metabolism]
CD-Length = 302 residues,  99.7% aligned
Score =  248 bits (634), Expect = 7e-67
Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 27/322 (8%)

pfam04069, OpuAC, Substrate binding domain of ABC-type glycine betaine 
transport system.
CD-Length = 260 residues, 100.0% aligned
Score =  215 bits (548), Expect = 7e-57
Identities = 81/283 (28%), Positives = 130/283 (45%), Gaps = 27/283 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34974




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2149_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2149
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3681
                           PA5096_tr
                           translation of PA5096
                           322
                           99.37
                           99.37
                           0
                           1673.0
     

     
     
113825
                           gb|AAG08481.1|AE004922_6
                           (AE004922) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           322
                           99.37
                           99.37
                           0
                           1673.0
     

     
     
113826
                           gb|AAO58697.1|
                           (AE016875) histidine transporter, periplasmic histidine-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           322
                           75.15
                           87.88
                           0
                           1339.0
     

     
     
3682
                           PA5103_tr
                           translation of PA5103
                           342
                           52.33
                           68.42
                           22
                           946.0
     

     
     
113827
                           gb|AAG08488.1|AE004923_4
                           (AE004923) hypothetical protein PA5103 [Pseudomonas aeruginosa PAO1]
                           342
                           52.33
                           68.42
                           22
                           946.0
     

     






      

          
GC ORFID: 45151How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5096Glimmer Score: 

          
Start: 5274257Stop: 5273289

          
Length: 969


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5096 translation of PA5096Homolog Bit Score 649.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6899 (ORF: BLASTX 521.0), t_PA5103 (ORF: BLASTX 364.0), psyr_15may02_Scaffold5_revised_gene6368 (ORF: BLASTX 321.0), t_PA5096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGATACAAGAAGTCGATGTTGAGTGTTCTCTGTGCCCTCGGCCTGCTCGCCGCCGCGGCGGGCGCCCAG 
GCGGAAGGCTGGTGCGAGTCCGGCAAGGCGGTGAAATTCGCCGGGCTGAACTGGGAGAGCGGGACGCTGCTC 
ACCGAGCTGATGCAGTTCGTCCTGGCCAAGGGCTACGGCTGTACCACCGACAGCCTGCCGGGCAACTCGATC 
ACCATGGAGCAGGCGCTGAGCACCAATGACATCCAGGTCTTCGCCGAGGAGTGGATCGGCCGCAGCGACGCC 
TGGAACAAGGCCGCCGCGGCCGGCAAGGTGGTCGGCGTCGGCGAACCCATCGTCGGCGCGGTGGAGGGCTGG 
TACGTGCCGCGCTACGTGATCGAGGGCGACCCGCAGCGCAAGCTCGAGGCGAAGGCGCCGAAGCTGCGCTCT 
ATCGCCGACCTGGCGCAGTACGCCGAGGTCTTCCGCGACCCGGAAGAACCGGGCAAGGGGCGCTTCTACAAT 
TGCCCGGCCGGCTGGACCTGCGAGCTGGAGAACAGCGAGATGCTGAAAAGCTACGGCCTGGAGGAGACGTTC 
ACCAATTTCCGTCCGGGCACCGGCCCGGCACTGGACGCGGCGGTGCTGTCGAGCTATCGGCGCGGCGAGCCT 
ATCCTGTTCTACTACTGGTCGCCGACGCCGCTGATGGGCCGTGCCGACCTGGTGCGCCTGGAGGAAAGGCCC 
GGCGTCGACAAGCGCATCAGGATCCAGGTCGGCCTGTCGCGGACCTTCCACGACCAGGCGCCGGAGCTGGTG 
GCGGTGCTGGAGAAGGTCAACCTGCCGGCGGAGCTGCTGAACAGCGACCTGGCGCGGATGGCCAAGGACAGG 
ATCGATGCAGCGCGCCTGGCGCGCGAGTTCCTCAAGGAGCACCCCGAGGTCTGGCACGCCTGGGTCGACGAG 
GACACGGCGAAGAAGATCGAAGCGGCACTCTGA