ViewGene
Locus Name:
GeneID:
Location:

GeneID:2148
TrivialName: PA14_19500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19500
PAO1 Ortholog Locus:PA3449
Sequence Length:1005
Protein Length:334
Start: 1685805
Stop: 1686809
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06837.1|AE004765_10 (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/334 (99%), Positives = 333/334 (99%), Gaps = 1/334 (0%)
Sequence:
ATGATCGCCGCTCTCCGTCGCTGCCGGGCCTGGCTGGCCCTGCTCGCCGTTCTTGCCGTGTTTCCCGCGGCC
GAAGCCGCCGACGCCCCCGCTGAAATCCGTCTCGACTATGCCTACTACGCCCCCACCAGCCTGGCGCTCAGG
AAGTTCGGCTGGCTGGAGAAAAGCCTGGACGGCAGCGGAACCCGGGTGCGCTGGGTGTTCAGCCAGGGCAGC
AACCGTTCCCTGGAGTACCTCAACGCCGGCAGCGTCGATTTCGCCTCGACCGCCGGCCTCGCCGCGGTACTC
GCGCGGGCCAACGGCAGCCCGGTACGTACCGTATACGTCGCCAGCCGCCCGGAGTGGACCGCGCTGCTGGTG
CGCAAGGATTCGCCGATCCGCAGCCTCGCCGAACTCAAGGGGCGCAAGGTGGCTGCCACCAAGGGCACCGAT
CCCTACCTGTTCCTGCTCCGCAGCCTGCACAGCGTGGGCCTGGACAAGAACGACCTGCGTATCGTCCACCTG
CAGCATCCCGACGGCCGGGTAGCCCTGGAGAAGGGCCAGGTCGACGCCTGGGCCGGGCTCGATCCGCACATG
GCGGCCAGCGAGTTGCAGGCCGGCTCGCGGCTGCTCTACCGCAACCTCGGCTTCAACAGCTACGGCGTGCTC
AACGTCCGCGAGGATTTCGCCGAACGCCATCCGCAACTGATCCGCCAGGTGCTGGCGGCCTACGAGCAGGCG
CGCCACTGGGTGATCGGGCACCCCGACGAGGCCGCGCAACTGCTTGCCGAGGAAGCCGGCCTGCCGCTGGAA
GTGGCTCGCCTGCAACTGTCGCGCACCGATTTCAGCCAGCCGCTGCCGGGCGCCGAACAGGTCGCCGCGCTC
AAGGCCGCGGCGCCGATCCTGGCGGACGAGCGCCTGGTGCGGCCGGGCGTGGACGTGCAGAAGGTGGTCGAC
GAACTGATCGCGCCGCAGTGGGCCGCCGAGGTCATCGGCGGTGTCCCGTTGGCGCGCACGGAGCCCTGA
Translation:
MIAALRRCRAWLALLAVLAVFPAAEAADAPAEIRLDYAYYAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGS
NRSLEYLNAGSVDFASTAGLAAVLARANGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTD
PYLFLLRSLHSVGLDKNDLRIVHLQHPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLGFNSYGVL
NVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAAQLLAEEAGLPLEVARLQLSRTDFSQPLPGAEQVAAL
KAAAPILADERLVRPGVDVQKVVDELIAPQWAAEVIGGVPLARTEP*
AnnotationID:2156GeneID:2148
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:41
Gene Name:
Confidence Code:3
GeneProduct:putative sulfonate binding protein
Cell Localization:()
Synonyms:ssuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:ABC transporter substrate-binding protein
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56288.1| (AE016865) ABC transporter, periplasmic substrate-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 336

 Score =  411 bits (1056), Expect = e-114
 Identities = 207/317 (65%), Positives = 257/317 (81%), Gaps = 5/317 (1%)

>gb|AAM35737.1| (AE011716) sulfonate binding protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 334

 Score =  370 bits (950), Expect = e-102
 Identities = 180/291 (61%), Positives = 225/291 (77%)

>dbj|BAC46182.1| (AP005938) ABC transporter substrate-binding protein
           [Bradyrhizobium japonicum USDA 110]
          Length = 374

 Score =  254 bits (650), Expect = 4e-67
 Identities = 146/345 (42%), Positives = 204/345 (59%), Gaps = 44/345 (12%)






 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  97.9% aligned
Score =  157 bits (398), Expect = 1e-39
Identities = 102/328 (31%), Positives = 149/328 (45%), Gaps = 11/328 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2148_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2148
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3680
                           PA3449_tr
                           translation of PA3449
                           334
                           99.40
                           99.70
                           1
                           1675.0
     

     
     
113820
                           gb|AAG06837.1|AE004765_10
                           (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           334
                           99.40
                           99.70
                           1
                           1675.0
     

     
     
113821
                           gb|AAO56288.1|
                           (AE016865) ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           348
                           60.34
                           74.71
                           26
                           1055.0
     

     
     
113822
                           gb|AAM35737.1|
                           (AE011716) sulfonate binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           344
                           55.23
                           69.18
                           20
                           942.0
     

     
     
113823
                           emb|CAE28065.1|
                           (BX572601) putative sulfonate transport system substrate-binding protein [Rhodopseudomonas palustris CGA009]
                           336
                           47.32
                           63.69
                           14
                           744.0
     

     






      

          
GC ORFID: 45150How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3449Glimmer Score: 

          
Start: 3268127Stop: 3267123

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3449 translation of PA3449Homolog Bit Score 649.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7014 (ORF: BLASTX 425.0), t_PA3449 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGCCGCTCTCCGTCGCTGCCGGGCCTGGCTGGCCCTGCTCGCCGTTCTTGCCGTGTTTCCCGCGGCC 
GAAGCCGCCGACGCCCCCGCTGAAATCCGTCTCGACTATGCCTACTACGCCCCCACCAGCCTGGCGCTCAGG 
AAGTTCGGCTGGCTGGAGAAAAGCCTGGACGGCAGCGGAACCCGGGTGCGCTGGGTGTTCAGCCAGGGCAGC 
AACCGTTCCCTGGAGTACCTCAACGCCGGCAGCGTCGATTTCGCCTCGACCGCCGGCCTCGCCGCGGTACTC 
GCGCGGGCCAACGGCAGCCCGGTACGTACCGTATACGTCGCCAGCCGCCCGGAGTGGACCGCGCTGCTGGTG 
CGCAAGGATTCGCCGATCCGCAGCCTCGCCGAACTCAAGGGGCGCAAGGTGGCTGCCACCAAGGGCACCGAT 
CCCTACCTGTTCCTGCTCCGCAGCCTGCACAGCGTGGGCCTGGACAAGAACGACCTGCGTATCGTCCACCTG 
CAGCATCCCGACGGCCGGGTAGCCCTGGAGAAGGGCCAGGTCGACGCCTGGGCCGGGCTCGATCCGCACATG 
GCGGCCAGCGAGTTGCAGGCCGGCTCGCGGCTGCTCTACCGCAACCTCGGCTTCAACAGCTACGGCGTGCTC 
AACGTCCGCGAGGATTTCGCCGAACGCCATCCGCAACTGATCCGCCAGGTGCTGGCGGCCTACGAGCAGGCG 
CGCCACTGGGTGATCGGGCACCCCGACGAGGCCGCGCAACTGCTTGCCGAGGAAGCCGGCCTGCCGCTGGAA 
GTGGCTCGCCTGCAACTGTCGCGCACCGATTTCAGCCAGCCGCTGCCGGGCGCCGAACAGGTCGCCGCGCTC 
AAGGCCGCGGCGCCGATCCTGGCGGACGAGCGCCTGGTGCGGCCGGGCGTGGACGTGCAGAAGGTGGTCGAC 
GAACTGATCGCGCCGCAGTGGGCCGCCGAGGTCATCGGCGGTGTCCCGTTGGCGCGCACGGAGCCCTGA