ViewGene
Locus Name:
GeneID:
Location:

GeneID:2147
TrivialName: PA14_21320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21320
PAO1 Ortholog Locus:PA3301
Sequence Length:951
Protein Length:316
Start: 1847854
Stop: 1846904
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06689.1|AE004752_5 (AE004752) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/316 (98%), Positives = 315/316 (99%)
Sequence:
ATGCCCGCCGCTGCCTACTGGCTCCCCGCCAGCGACGAAACCCCGCTGTACACCCGCCACTGGCCGAGCGCA
ACGGCCGTCGGCGCGGTGATGCTGTCCCACGGCATGGCCGAGCACGCCGGTCGCTACGAGCGTCTCGCCGCC
GCGCTGAACGCTGCCGGCTACCACTTCTATGCGATCGACCAGCGCGGCCACGGCCGGACCGCCGAAGCCGAC
GAGCTGGGCCACTTCGCCGACCAGGGCGGCTGGGGCAAGGTGGTCGGCGACCTGGCCAGCCTGAACCACCAT
ATCCGCCAGCAGCACCCGGAACTGCCGATCTTCCTGCTGGGCCACAGCATGGGCAGCTACATCTCCATGGCC
TACCTGCTGCACCACAGCTGCAGCCTGCAAGGGGCGATCCTTTCCGGCTCCAACTACCAGCCGCAAGCGCTC
TACCGGGTCGCCCGCCTGATCGCCCGCTTCGAGCGCTGGCGCCAGGGGCCGCTGGGCAAGAGCGCGCTGATC
GACTTCCTCTCGTTCGGCTCGTTCAACAAGGCGTTCAAGCCCAATCGCACGGCCTTCGACTGGCTCAGTCGC
GATCCGCAGGAAGTCGACAGGTACGTGGCCGACCCGCTGTGCGGCTTCCGCTGCAGCAACCAGTTGTGGGTG
GACCTGCTCGGCGGCCTGGCCGATATCACCCCGCCCACCCACCTGCGGCAGATCGATGCCGGCCTGCCGCTG
CTGGTCATCGGCGGCGAACGCGACCCGGTCAGCCAGGGCAGGCGCCTGGGCGACCTGGCCGACGCCCTGCGC
GGCGCCGGGCTGCGCCAGGTGACCCTGAAGACCTATCCCGAGGCCCGTCACGAGCTGTTCAACGAGAGCAAC
CGCGACGCGGTCACCCAAGACCTGATCGACTGGCTGGAACAGGCCCTGCGCCACCGCCGGGATCATTCGACA
AAGGAGAGAACATGA
Translation:
MPAAAYWLPASDETPLYTRHWPSATAVGAVMLSHGMAEHAGRYERLAAALNAAGYHFYAIDQRGHGRTAEAD
ELGHFADQGGWGKVVGDLASLNHHIRQQHPELPIFLLGHSMGSYISMAYLLHHSCSLQGAILSGSNYQPQAL
YRVARLIARFERWRQGPLGKSALIDFLSFGSFNKAFKPNRTAFDWLSRDPQEVDRYVADPLCGFRCSNQLWV
DLLGGLADITPPTHLRQIDAGLPLLVIGGERDPVSQGRRLGDLADALRGAGLRQVTLKTYPEARHELFNESN
RDAVTQDLIDWLEQALRHRRDHSTKERT*
AnnotationID:2155GeneID:2147
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:01
Gene Name:
Confidence Code:3
GeneProduct:putative lysophospholipase
Cell Localization:()
Synonyms:PA3301
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative hydrolase, alpha/beta fold family
Functional Category Confidence Code:5
COGs:COG2267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70124.1|AE016652_5 (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 314

 Score =  417 bits (1072), Expect = e-116
 Identities = 208/305 (68%), Positives = 233/305 (76%), Gaps = 1/305 (0%)

>gb|AAP08762.1| (AE017003) Lysophospholipase L2 [Bacillus cereus ATCC 14579]
          Length = 307

 Score =  232 bits (591), Expect = 3e-60
 Identities = 116/298 (38%), Positives = 176/298 (59%), Gaps = 4/298 (1%)








 
Structural Features:
COG2267, PldB, Lysophospholipase [Lipid metabolism]
CD-Length = 298 residues,  96.0% aligned
Score =  212 bits (542), Expect = 3e-56
Identities = 102/304 (33%), Positives = 132/304 (43%), Gaps = 21/304 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21443




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32251




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2147_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2147
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3679
                           PA3301_tr
                           translation of PA3301
                           316
                           98.73
                           99.68
                           0
                           1674.0
     

     
     
113814
                           gb|AAG06689.1|AE004752_5
                           (AE004752) hypothetical protein PA3301 [Pseudomonas aeruginosa PAO1]
                           316
                           98.73
                           99.68
                           0
                           1674.0
     

     
     
113815
                           gb|AAN70124.1|AE016652_5
                           (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           317
                           65.93
                           74.44
                           4
                           1071.0
     

     
     
113816
                           gb|AAQ57846.1|
                           (AE016910) probable lysophospholipase L2 [Chromobacterium violaceum ATCC 12472]
                           337
                           41.24
                           51.92
                           42
                           595.0
     

     
     
113817
                           gb|AAN30369.1|AE014441_7
                           (AE014441) conserved hypothetical protein [Brucella suis 1330]
                           320
                           38.75
                           53.43
                           10
                           555.0
     

     






      

          
GC ORFID: 45149How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3301Glimmer Score: 

          
Start: 3106077Stop: 3107027

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3301 translation of PA3301Homolog Bit Score 649.0

          
Other Homologs:  t_PA3301 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCCGCTGCCTACTGGCTCCCCGCCAGCGACGAAACCCCGCTGTACACCCGCCACTGGCCGAGCGCA 
ACGGCCGTCGGCGCGGTGATGCTGTCCCACGGCATGGCCGAGCACGCCGGTCGCTACGAGCGTCTCGCCGCC 
GCGCTGAACGCTGCCGGCTACCACTTCTATGCGATCGACCAGCGCGGCCACGGCCGGACCGCCGAAGCCGAC 
GAGCTGGGCCACTTCGCCGACCAGGGCGGCTGGGGCAAGGTGGTCGGCGACCTGGCCAGCCTGAACCACCAT 
ATCCGCCAGCAGCACCCGGAACTGCCGATCTTCCTGCTGGGCCACAGCATGGGCAGCTACATCTCCATGGCC 
TACCTGCTGCACCACAGCTGCAGCCTGCAAGGGGCGATCCTTTCCGGCTCCAACTACCAGCCGCAAGCGCTC 
TACCGGGTCGCCCGCCTGATCGCCCGCTTCGAGCGCTGGCGCCAGGGGCCGCTGGGCAAGAGCGCGCTGATC 
GACTTCCTCTCGTTCGGCTCGTTCAACAAGGCGTTCAAGCCCAATCGCACGGCCTTCGACTGGCTCAGTCGC 
GATCCGCAGGAAGTCGACAGGTACGTGGCCGACCCGCTGTGCGGCTTCCGCTGCAGCAACCAGTTGTGGGTG 
GACCTGCTCGGCGGCCTGGCCGATATCACCCCGCCCACCCACCTGCGGCAGATCGATGCCGGCCTGCCGCTG 
CTGGTCATCGGCGGCGAACGCGACCCGGTCAGCCAGGGCAGGCGCCTGGGCGACCTGGCCGACGCCCTGCGC 
GGCGCCGGGCTGCGCCAGGTGACCCTGAAGACCTATCCCGAGGCCCGTCACGAGCTGTTCAACGAGAGCAAC 
CGCGACGCGGTCACCCAAGACCTGATCGACTGGCTGGAACAGGCCCTGCGCCACCGCCGGGATCATTCGACA 
AAGGAGAGAACATGA