ViewGene
Locus Name:
GeneID:
Location:

GeneID:2143
TrivialName: PA14_14210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14210
PAO1 Ortholog Locus:PA3850
Sequence Length:912
Protein Length:303
Start: 1213761
Stop: 1214672
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07237.1|AE004802_6 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/303 (98%), Positives = 301/303 (99%)
Sequence:
ATGAACGCCTACGACATCGAAATCGTCAACGACGCCGCGCACGCCGGCGAAGCCAACCACGGCTGGTGCTTC
GGCCTGCCGCCGGGCATCCGTCCGGAGCAGTGGCCGCTGGATCCGGACACCGGCTATCCGCTGATGCACGGC
TTCACCCTGCTGCTGCCGGAGGACTACCGGGTGCATGGCCCGGAGATCGTCGCGCTGAGCTTCTTCTCCCTC
GCCCCGGACCAGAACGACGGTGGACCGACCAGCGTCGACGGCATTCGCGAGATGCTCATCGATCCGCCCGCG
CAACCGCCGGCCGACGCGGAACTGCGGCCGTTCTGGGAGGCCGGGCGCAATAGCCATCCGCGTCTGCACCGG
ATGGAGGACATCCTCGGCGGTGCCTATGCGTTGATCCTGCTCGACGCCGCTGAATTCAGCGGCGCGCCCTGC
CAGCCGCCGGCGCTGCCGGCGGGCAACCCGCTGTTGGCGCAGACCGAGCCGCCGCAGTGGCTGGAGGCTGGT
TCGGCGGCCAGCTTCGTGCCGGACTGGGCGGAGGACGACTACTACCTGCTGCGCGCCCTCGGTGGTCGCCCG
GCGGCCGGCCACCAGCAGCGCTACCCGCTGCGCTGGACGGCGCGGGCGCAAGACCCCAACGCCGGGGTGGTG
CCCAGCGAATACGGCGACGGCGGCTACCAGCTGCCGCACTACTGGCTGGACGGCAAGATCGAGCGCGACAAC
TACCGCGAGCATCCCTGGGTGGAAGGGCACCTGCCGAACCATATCGGCGGCACCATGCGTCCGGTGCAGGGC
GTGCCGGAGATGACTCCCTTCTACGTAGAGTTCGAGGAATACCTGGGCGGCTACAACTTCGGCGGCGGCAAC
GCCCAGCTCGATTTCCGCGACATGCGCTTCGACTGGGCCTGCGGCTGA
Translation:
MNAYDIEIVNDAAHAGEANHGWCFGLPPGIRPEQWPLDPDTGYPLMHGFTLLLPEDYRVHGPEIVALSFFSL
APDQNDGGPTSVDGIREMLIDPPAQPPADAELRPFWEAGRNSHPRLHRMEDILGGAYALILLDAAEFSGAPC
QPPALPAGNPLLAQTEPPQWLEAGSAASFVPDWAEDDYYLLRALGGRPAAGHQQRYPLRWTARAQDPNAGVV
PSEYGDGGYQLPHYWLDGKIERDNYREHPWVEGHLPNHIGGTMRPVQGVPEMTPFYVEFEEYLGGYNFGGGN
AQLDFRDMRFDWACG*
AnnotationID:2151GeneID:2143
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21435




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2143
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3663
                           PA3850_tr
                           translation of PA3850
                           303
                           98.67
                           99.33
                           0
                           1678.0
     

     
     
112951
                           gb|AAG07237.1|AE004802_6
                           (AE004802) hypothetical protein PA3850 [Pseudomonas aeruginosa PAO1]
                           303
                           98.67
                           99.33
                           0
                           1678.0
     

     
     
112952
                           dbj|BAC45625.1|
                           (AP005936) blr0360 [Bradyrhizobium japonicum USDA 110]
                           315
                           48.88
                           59.68
                           39
                           766.0
     

     






      

          
GC ORFID: 45145How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3850Glimmer Score: 

          
Start: 3740177Stop: 3739266

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3850 translation of PA3850Homolog Bit Score 650.0

          
Other Homologs:  t_PA3850 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCTACGACATCGAAATCGTCAACGACGCCGCGCACGCCGGCGAAGCCAACCACGGCTGGTGCTTC 
GGCCTGCCGCCGGGCATCCGTCCGGAGCAGTGGCCGCTGGATCCGGACACCGGCTATCCGCTGATGCACGGC 
TTCACCCTGCTGCTGCCGGAGGACTACCGGGTGCATGGCCCGGAGATCGTCGCGCTGAGCTTCTTCTCCCTC 
GCCCCGGACCAGAACGACGGTGGACCGACCAGCGTCGACGGCATTCGCGAGATGCTCATCGATCCGCCCGCG 
CAACCGCCGGCCGACGCGGAACTGCGGCCGTTCTGGGAGGCCGGGCGCAATAGCCATCCGCGTCTGCACCGG 
ATGGAGGACATCCTCGGCGGTGCCTATGCGTTGATCCTGCTCGACGCCGCTGAATTCAGCGGCGCGCCCTGC 
CAGCCGCCGGCGCTGCCGGCGGGCAACCCGCTGTTGGCGCAGACCGAGCCGCCGCAGTGGCTGGAGGCTGGT 
TCGGCGGCCAGCTTCGTGCCGGACTGGGCGGAGGACGACTACTACCTGCTGCGCGCCCTCGGTGGTCGCCCG 
GCGGCCGGCCACCAGCAGCGCTACCCGCTGCGCTGGACGGCGCGGGCGCAAGACCCCAACGCCGGGGTGGTG 
CCCAGCGAATACGGCGACGGCGGCTACCAGCTGCCGCACTACTGGCTGGACGGCAAGATCGAGCGCGACAAC 
TACCGCGAGCATCCCTGGGTGGAAGGGCACCTGCCGAACCATATCGGCGGCACCATGCGTCCGGTGCAGGGC 
GTGCCGGAGATGACTCCCTTCTACGTAGAGTTCGAGGAATACCTGGGCGGCTACAACTTCGGCGGCGGCAAC 
GCCCAGCTCGATTTCCGCGACATGCGCTTCGACTGGGCCTGCGGCTGA