ViewGene
Locus Name:
GeneID:
Location:

GeneID:2141
TrivialName: PA14_35430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35430
PAO1 Ortholog Locus:PA2254
Sequence Length:987
Protein Length:328
Start: 3150795
Stop: 3149809
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05642.1|AE004651_4 (AE004651) pyoverdine biosynthesis protein PvcA [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 327/328 (99%)
Sequence:
ATGTACGCCATCGCCGAAGACACCCTTCCCGCACGCGTATTGAAAGAACTGTTGCTCTATCGCCGCCGTTAC
CCCGAGCATCGCCAGAGCGCCAGCGAAGCGGACGAGGTCCGCCGCATCGAACAGGTCCAGTTGCCGCGTATC
GCCGCCTTCATCGAAGCCGGCGAGCCCATCGAGTTCGTCCTGCCGGCGTTTCCGGCCAAGTCGCCGAACCCC
GGCAAGGTCCTCGACAGCCGTCCGGACATGGCCGAGCGCCTGTCGCTGTCGTTCCTCAACCACCTGTGCCAG
CGCATCCAGCTGTTCTATGCACCGGGCGCGAAGATCACCGTCTGCTCCGACGGCCGGGTGTTCGGCGACCTG
GTGAGGATCGGCGATGCGCACATCAGCGCCTACCAGGATGCCTTGCGCCTGATGATCGAGGAGATCGGCGCC
ACCCATATCGGCGTGTTCAACCTGGAGGACGTACGCGCCTTCGAGGCCCAGCGCGACAACCACGAGCAGCTC
CGCCAGTTGCTGATCGACGGCTACGCCGAGCCGCTGGAAAGCATCCGCGAGACCCTGCTGGCCAGCGAAGAA
GGCCTGCTGCTGTACCGCGCCATCACCCGCTTCCTCTACGAGGACGGCCTGACCCCCGACTACCAGGGCTCG
AAGACCGCCCTGCAACGCGACGCCAAGGAGCGCGCCTACGGGGTGATCCAGCGCAGCTGGGCCTGGGGCGCG
CTGCTGGCCGACCAGTTCCCCCGCGCGATCCGTCTGTCCATCCATCCGCAGCCGGCGGACAGCCTGAAGTTC
GGCATCCACATGATGCCGACCCGCGACGACTGGCTGACGCCCTGGCACGGCGTGGCGGTGAACACCGAGGAC
CGCTTCGTGCTGATGAAGCGCAGCGAGGTGCTGGAACTCGGCGGCGAACTGGTGCAGATCAACGGCCAGCCC
AGTCACTACCGCCTGCCGGCCAGGGCCGCCCGGCGCGCCGCCGTGGCCTGA
Translation:
MYAIAEDTLPARVLKELLLYRRRYPEHRQSASEADEVRRIEQVQLPRIAAFIEAGEPIEFVLPAFPAKSPNP
GKVLDSRPDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSDGRVFGDLVRIGDAHISAYQDALRLMIEEIGA
THIGVFNLEDVRAFEAQRDNHEQLRQLLIDGYAEPLESIRETLLASEEGLLLYRAITRFLYEDGLTPDYQGS
KTALQRDAKERAYGVIQRSWAWGALLADQFPRAIRLSIHPQPADSLKFGIHMMPTRDDWLTPWHGVAVNTED
RFVLMKRSEVLELGGELVQINGQPSHYRLPARAARRAAVA*
AnnotationID:2149GeneID:2141
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 16:04:52
Gene Name:pvcA
Confidence Code:1
GeneProduct:pyoverdine biosynthesis protein PvcA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyoverdine synthesis
Homology:






 
Structural Features:






   
Genomic Context:
First of four ORF cluster.






   
Comment:


















    ReferenceID:4285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17020




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA2254_CDS.cgi


    		




 
URL:

















    ReferenceID:21431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2141
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3659
                           PA2254_tr
                           translation of PA2254
                           328
                           99.39
                           99.69
                           0
                           1678.0
     

     
     
112835
                           gb|AAG05642.1|AE004651_4
                           (AE004651) pyoverdine biosynthesis protein PvcA [Pseudomonas aeruginosa PAO1]
                           328
                           99.39
                           99.69
                           0
                           1678.0
     

     
     
112836
                           gb|AAC21671.1|
                           (AF002222) PvcA [Pseudomonas aeruginosa]
                           328
                           99.08
                           99.39
                           1
                           1662.0
     

     
     
112837
                           emb|CAE15190.1|
                           (BX571868) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           338
                           52.36
                           68.04
                           23
                           939.0
     

     






      

          
GC ORFID: 45143How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2254Glimmer Score: 

          
Start: 1803121Stop: 1804107

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2254 translation of PA2254Homolog Bit Score 650.0

          
Other Homologs:  t_PA2254 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGCCATCGCCGAAGACACCCTTCCCGCACGCGTATTGAAAGAACTGTTGCTCTATCGCCGCCGTTAC 
CCCGAGCATCGCCAGAGCGCCAGCGAAGCGGACGAGGTCCGCCGCATCGAACAGGTCCAGTTGCCGCGTATC 
GCCGCCTTCATCGAAGCCGGCGAGCCCATCGAGTTCGTCCTGCCGGCGTTTCCGGCCAAGTCGCCGAACCCC 
GGCAAGGTCCTCGACAGCCGTCCGGACATGGCCGAGCGCCTGTCGCTGTCGTTCCTCAACCACCTGTGCCAG 
CGCATCCAGCTGTTCTATGCACCGGGCGCGAAGATCACCGTCTGCTCCGACGGCCGGGTGTTCGGCGACCTG 
GTGAGGATCGGCGATGCGCACATCAGCGCCTACCAGGATGCCTTGCGCCTGATGATCGAGGAGATCGGCGCC 
ACCCATATCGGCGTGTTCAACCTGGAGGACGTACGCGCCTTCGAGGCCCAGCGCGACAACCACGAGCAGCTC 
CGCCAGTTGCTGATCGACGGCTACGCCGAGCCGCTGGAAAGCATCCGCGAGACCCTGCTGGCCAGCGAAGAA 
GGCCTGCTGCTGTACCGCGCCATCACCCGCTTCCTCTACGAGGACGGCCTGACCCCCGACTACCAGGGCTCG 
AAGACCGCCCTGCAACGCGACGCCAAGGAGCGCGCCTACGGGGTGATCCAGCGCAGCTGGGCCTGGGGCGCG 
CTGCTGGCCGACCAGTTCCCCCGCGCGATCCGTCTGTCCATCCATCCGCAGCCGGCGGACAGCCTGAAGTTC 
GGCATCCACATGATGCCGACCCGCGACGACTGGCTGACGCCCTGGCACGGCGTGGCGGTGAACACCGAGGAC 
CGCTTCGTGCTGATGAAGCGCAGCGAGGTGCTGGAACTCGGCGGCGAACTGGTGCAGATCAACGGCCAGCCC 
AGTCACTACCGCCTGCCGGCCAGGGCCGCCCGGCGCGCCGCCGTGGCCTGA