ViewGene

Locus Name:
GeneID:
Location:

GeneID:2140
TrivialName: PA14_48730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48730
PAO1 Ortholog Locus:PA1205
Sequence Length:948
Protein Length:315
Start: 4333872
Stop: 4332925
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04594.1|AE004550_10 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/315 (99%), Positives = 312/315 (99%)
Sequence:
ATGAGCAATACCGAAGAGCGTTGCGACCTGTCCTCCTCGCGGGACTGTCCGGAGCGCCGCGAACACCTGCTG
CAACGAGTCACCGCGCGCGCCGCGGAAATCGGCGGCGGGATCACCGTCAGTCGGCTGATGCCGTCGCGCCAG
CGGCGGATGATCGGCGCCTGGTGCTTCCTCGACCATGCCGGTCCCGCCGAATTCGAACCCGGCGGCGGCCTG
GCCGTGGGCCCGCACCCGCACATCGGCCTGCAGACCTTTACCTGGATGATCCAGGGCGAGGCGTTGCACCGC
GACAGCCTGGGCAACGTCCAGGTGATCCGTCCGGGCCAGGTCAACCTGATGACCGCCGGCCATGGCATCGCC
CACACCGAGGAGTCGCTGCCCGACGAGCGCCACGCCCACGCCGCGCAGTTGTGGATCGCGCTGCCCTACGAG
CAGCGCGACATCGCCCCGGCCTTCGACCATCATCCCGACCTGCCGCGCTGGCAGGAGCAGGGGGTCACCTTC
ACCCTGCTGGCCGGCGCTCTGGACGGGCGGCAGGCGCCGTGCCGGCTTTACTCGCCGCTGCTCGGCGCCGAC
CTGGCCTGCGACGATGCCTCGACCCTGCAACTGACGCTCGACCCGCACTTCGAGTACGGCCTGCTGCCGCTG
GAAGGCGGGTTGGAAGTGGGCGGCGAGCATTTCGCGGTGAACGAACTGGCCTACCTGGGCGACGGCCGCGAC
GGCCTGCAACTGCAACTCGATCCTGGCGCGCGGGTGCTGTTGCTGGGCGGCGCACCGTTCGGCGCGGAGATC
TTCATGTGGTGGAACTTCGTCGGCCACAGCAAGGGTGAGATCGCCCGGGCGCAGAAGGCCTGGGAGGAGGGG
GATGCCCGCTTCGGCCGGCTCGACGCCCTGGAAGGGCCGCGCTTGAGCGCTCCGCCGATTCCCTGGAAGATC
GACGCCGAGTGA
Translation:
MSNTEERCDLSSSRDCPERREHLLQRVTARAAEIGGGITVSRLMPSRQRRMIGAWCFLDHAGPAEFEPGGGL
AVGPHPHIGLQTFTWMIQGEALHRDSLGNVQVIRPGQVNLMTAGHGIAHTEESLPDERHAHAAQLWIALPYE
QRDIAPAFDHHPDLPRWQEQGVTFTLLAGALDGRQAPCRLYSPLLGADLACDDASTLQLTLDPHFEYGLLPL
EGGLEVGGEHFAVNELAYLGDGRDGLQLQLDPGARVLLLGGAPFGAEIFMWWNFVGHSKGEIARAQKAWEEG
DARFGRLDALEGPRLSAPPIPWKIDAE*
AnnotationID:2148GeneID:2140
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:23
Gene Name:
Confidence Code:4
GeneProduct:putative pirin protein
Cell Localization:()
Synonyms:PA1205
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1741
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL52680.1| (AE009586) PIRIN [Brucella melitensis 16M]
          Length = 315

 Score =  196 bits (497), Expect = 2e-49
 Identities = 115/290 (39%), Positives = 155/290 (53%), Gaps = 15/290 (5%)

>gb|AAM37722.1| (AE011929) pirin-related protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 310

 Score =  192 bits (489), Expect = 2e-48
 Identities = 119/290 (41%), Positives = 159/290 (54%), Gaps = 16/290 (5%)

>emb|CAD13905.1| (AL646058) PUTATIVE PIRIN-LIKE PROTEIN [Ralstonia solanacearum]
          Length = 289

 Score =  191 bits (486), Expect = 4e-48
 Identities = 110/278 (39%), Positives = 159/278 (57%), Gaps = 13/278 (4%)

Structural Features:
COG1741, Pirin-related protein
CD-Length = 276 residues,  98.9% aligned
Score =  230 bits (588), Expect = 3e-61
Identities = 103/278 (37%), Positives = 138/278 (49%), Gaps = 10/278 (3%)
Genomic Context:
Comment:
ReferenceID:4283
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21429
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37572
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2140_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2140

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3658 PA1205_tr translation of PA1205 315 99.04 99.04 0 1679.0
112824 gb|AAG04594.1|AE004550_10 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 315 99.04 99.04 0 1679.0
112825 emb|CAB56728.1| (AL939105) conserved hypothetical protein SCF76.08c [Streptomyces coelicolor A3(2)] 333 44.14 56.15 26 688.0
112827 emb|CAE45659.1| (AJ580915) hypothetical protein [Streptomyces parvulus] 331 42.90 55.58 24 661.0
112826 emb|CAB62672.1| (AL939107) conserved hypothetical protein SCM1.14c. [Streptomyces coelicolor A3(2)] 326 41.41 58.58 16 652.0
GC ORFID: 45142How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1205Glimmer Score:
Start: 620036Stop: 620983
Length: 948
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1205 translation of PA1205Homolog Bit Score 651.0
Other Homologs: t_PA1205 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAATACCGAAGAGCGTTGCGACCTGTCCTCCTCGCGGGACTGTCCGGAGCGCCGCGAACACCTGCTG
CAACGAGTCACCGCGCGCGCCGCGGAAATCGGCGGCGGGATCACCGTCAGTCGGCTGATGCCGTCGCGCCAG
CGGCGGATGATCGGCGCCTGGTGCTTCCTCGACCATGCCGGTCCCGCCGAATTCGAACCCGGCGGCGGCCTG
GCCGTGGGCCCGCACCCGCACATCGGCCTGCAGACCTTTACCTGGATGATCCAGGGCGAGGCGTTGCACCGC
GACAGCCTGGGCAACGTCCAGGTGATCCGTCCGGGCCAGGTCAACCTGATGACCGCCGGCCATGGCATCGCC
CACACCGAGGAGTCGCTGCCCGACGAGCGCCACGCCCACGCCGCGCAGTTGTGGATCGCGCTGCCCTACGAG
CAGCGCGACATCGCCCCGGCCTTCGACCATCATCCCGACCTGCCGCGCTGGCAGGAGCAGGGGGTCACCTTC
ACCCTGCTGGCCGGCGCTCTGGACGGGCGGCAGGCGCCGTGCCGGCTTTACTCGCCGCTGCTCGGCGCCGAC
CTGGCCTGCGACGATGCCTCGACCCTGCAACTGACGCTCGACCCGCACTTCGAGTACGGCCTGCTGCCGCTG
GAAGGCGGGTTGGAAGTGGGCGGCGAGCATTTCGCGGTGAACGAACTGGCCTACCTGGGCGACGGCCGCGAC
GGCCTGCAACTGCAACTCGATCCTGGCGCGCGGGTGCTGTTGCTGGGCGGCGCACCGTTCGGCGCGGAGATC
TTCATGTGGTGGAACTTCGTCGGCCACAGCAAGGGTGAGATCGCCCGGGCGCAGAAGGCCTGGGAGGAGGGG
GATGCCCGCTTCGGCCGGCTCGACGCCCTGGAAGGGCCGCGCTTGAGCGCTCCGCCGATTCCCTGGAAGATC
GACGCCGAGTGA