ViewGene
Locus Name:
GeneID:
Location:

GeneID:214
TrivialName: PA14_58570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58570
PAO1 Ortholog Locus:PA4514
Sequence Length:2262
Protein Length:753
Start: 5219583
Stop: 5217322
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07902.1|AE004865_3 (AE004865) probable outer membrane receptor for iron transport [Pseudomonas aeruginosa PAO1]
Identities = 752/753 (99%), Positives = 752/753 (99%)
Sequence:
ATGTCGCGTCAGTCCACGGATACCGCCGTTTCTTCGCAACGTCTGCTGGCTTCTGCCATCGGTGTCGCCATC
ACCGCCATCGCCGCACCGCAGGCAGCCCACGCCGACGAGGCCGGGCAGAAAAAGACCGACAAGGACCGCGTA
CTGTCGCTGGATGCGGCCACCATCGtcggCGAGCAGCAggACGAAACCACCTATAACGTCGACCGCTCGGCG
TCGAAGAAGTACACCGCGCCGCTGCTGGATACGCCGAAGACCGTCACCGTGATCCCGCAACAGGTGATCAAG
GACACTGGCGCCCTGACCCTGGCCGACGCACTGCGCACCACCCCGGGTATCACCTTCGGCGCGGGCGAGGGC
GGCAACCCCGCAGGCGACCGGCCATTCATCCGTGGCTTCAACGCCGAGAGCGATACGTTCCTCGACGGTATG
CGCGACGTCGCCTCGCAAACCCGCGAGGTGTTCAACGTCGAGCAGATCGAGGTCAGCAAGGGCCCGGGCTCG
GCCTACACCGGCGCCGGCTCCACCGGTGGCAGCCTGAACCTGATCAGCAAGACCGCCAAGCAGGACAACTTC
ACCGACGCCGGCTTCACCTGGGGCTCAGACCAGACCCGCCGCACTACTCTCGACGTGAACCGGATGATTGGC
GACAACGCCGCCTTCCGCCTCAACCTGATGAAGCACGATGCCCACGTCGCAGGGCGCGACGAAGTCAGCGTC
AGCCGCTGGGGCGTGGCTCCGACCGTTACCTTCGGCTTCGACACGCCGACCCGCGCCACCCTGTCCTATTAC
CATCTCAGCACCGATGACATGCCGGACTACGGCCTGCCGCTGACCAACGTCAACCGCAGCAAAGCCAATCCG
AGCAAGCCGGCCTCGGTGGATCGCGATAACTTCTATGGCCTGAAGGACCGCGACTACCGCAAGAGCACCACC
GACAGCGGCACCTTCCGCATCGAGCATGACCTGAACGACAACCTGACCCTGTCGAATAGCACCCGCCTGGTG
CGCACGACGCTCGACTACATCGTCAGCAACCCCGACGACAGCCGTGGCAACGTTGCCAACGGCTACGTCTAC
CGTTCGGCGAAAAGCCGCAATTCGACCTCGAAGGGCTGGGTCAACCAGACCGACCTGAAGGCCAACTTCGAA
ACCGGCTTCATCAAGCACACCCTGGTGACCGGCCTGGAGTTCAGCTACGAGGACGTGCACAACCGTCCGTAC
GCCATTACTTCCGGTGGCGGCGCCGGCAACACCTGCAATGCACGATTGCTCGCTAGTGGCGACTGCACCAGC
CTGAATCGCCCGACTCCGGGCGACAACTGGACCGGCAGCATCACCGACGGCCTGGCCTATACCGATACCGAC
ACCAAGACCAGCGCGGCTTATGTGTTCGATACCCTGAAGCTAAGCGAACAATGGGAGCTGAATCTCGGCCTG
CGCTACGACGACTTCGATACCAAGTCCAGCGGCTACCAGACGGCTGGCCGCAACGGTCCCGCCGGCTACTTC
AAGCGCGAGAACAACAGCCACTTCTGGAACTACCAGACCGGTCTGGTCTACAAACCGGCGCCCAACGGCAGC
ATCTACCTGGCCTGGTCGACCTCGAGCAACCCCACCGGCGAGACCGGCGGCGAGGGCCAGGCGGACATCAGC
GTAGGCAACAACGGGTTGGATCCGGAGCGTAACCGCAACCTCGAACTGGGTACCAAGTGGGCCTTCTTCGAC
GATGCTCTGTCGCTGAACGCCGCGCTTTTCCGCACCGACAAGACCAATGCCCGGGTCGCTTCGCCGGATGTT
TCCACTCTTCAGGTACTGGACGGCGAGCAGCGGGTGCAGGGCGTCGAGCTGGGCTTCAATGGCAAGCTGACC
GAGAAGTGGAAGGTCTTCGGCGGCTACACCTACCTCGACAGCGAAATCCGCAAGTCGACGGTGAAGAGCGAC
GAAGGCAACAAGATGCCGCAGACCGCGCAGAACAACTTCACTCTGTGGACCACCTACGATCTGTTGCAGAAC
TTCACTATCGGCGGTGGTACCACCTATGTGGACAAGCAGTACGGCAACACTGCGAACTCTACCTATATCCCG
TCCTACTGGCGCTATGACGCCATGGCCAGCTACAAGGTGAGCAAGAACGTCGACCTGCAACTGAACGTGCAG
AACCTGACCGACAAGCGCTACTTCGACCAGGTCTACAGCACGCACATGGCCCACGTTGCTCCGGGCCGCACG
GCATTGCTCGGGGTGAACTTCCACTTCTGA
Translation:
MSRQSTDTAVSSQRLLASAIGVAITAIAAPQAAHADEAGQKKTDKDRVLSLDAATIVGEQQDETTYNVDRSA
SKKYTAPLLDTPKTVTVIPQQVIKDTGALTLADALRTTPGITFGAGEGGNPAGDRPFIRGFNAESDTFLDGM
RDVASQTREVFNVEQIEVSKGPGSAYTGAGSTGGSLNLISKTAKQDNFTDAGFTWGSDQTRRTTLDVNRMIG
DNAAFRLNLMKHDAHVAGRDEVSVSRWGVAPTVTFGFDTPTRATLSYYHLSTDDMPDYGLPLTNVNRSKANP
SKPASVDRDNFYGLKDRDYRKSTTDSGTFRIEHDLNDNLTLSNSTRLVRTTLDYIVSNPDDSRGNVANGYVY
RSAKSRNSTSKGWVNQTDLKANFETGFIKHTLVTGLEFSYEDVHNRPYAITSGGGAGNTCNARLLASGDCTS
LNRPTPGDNWTGSITDGLAYTDTDTKTSAAYVFDTLKLSEQWELNLGLRYDDFDTKSSGYQTAGRNGPAGYF
KRENNSHFWNYQTGLVYKPAPNGSIYLAWSTSSNPTGETGGEGQADISVGNNGLDPERNRNLELGTKWAFFD
DALSLNAALFRTDKTNARVASPDVSTLQVLDGEQRVQGVELGFNGKLTEKWKVFGGYTYLDSEIRKSTVKSD
EGNKMPQTAQNNFTLWTTYDLLQNFTIGGGTTYVDKQYGNTANSTYIPSYWRYDAMASYKVSKNVDLQLNVQ
NLTDKRYFDQVYSTHMAHVAPGRTALLGVNFHF*
AnnotationID:224GeneID:214
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 14:02:31
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane ferric siderophore receptor
Cell Localization:()
Synonyms:PA4514, piuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4774,pfam00593,COG1629,COG4773
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66486.1|AE016277_5 (AE016777) outer membrane ferric siderophore receptor [Pseudomonas
           putida KT2440]
          Length = 780

 Score =  736 bits (1901), Expect = 0.0
 Identities = 389/777 (50%), Positives = 518/777 (66%), Gaps = 41/777 (5%)


>gb|AAN56889.1|AE015823_11 (AE015823) TonB-dependent receptor, putative [Shewanella oneidensis
           MR-1]
          Length = 730

 Score =  667 bits (1722), Expect = 0.0
 Identities = 341/753 (45%), Positives = 474/753 (62%), Gaps = 30/753 (3%)






 
Structural Features:
COG4774, Fiu, Outer membrane receptor for monomeric catechols 
[Inorganic ion transport and metabolism]
CD-Length = 750 residues, 100.0% aligned
Score =  986 bits (2549), Expect = 0.0
Identities = 412/766 (53%), Positives = 501/766 (65%), Gaps = 29/766 (3%)

pfam00593, TonB_dep_Rec, TonB dependent receptor. 
CD-Length = 712 residues, 100.0% aligned
Score =  284 bits (726), Expect = 8e-77
Identities = 190/733 (25%), Positives = 283/733 (38%), Gaps = 81/733 (11%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport
[Inorganic ion transport and metabolism]
CD-Length = 768 residues, 100.0% aligned
Score =  192 bits (488), Expect = 2e-49
Identities = 195/785 (24%), Positives = 286/785 (36%), Gaps = 65/785 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17573




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31561




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:214_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
375
                           PA4514_tr
                           translation of PA4514
                           753
                           99.86
                           99.86
                           0
                           3946.0
     

     
     
22101
                           gb|AAG07902.1|AE004865_3
                           (AE004865) probable outer membrane receptor for iron transport [Pseudomonas aeruginosa PAO1]
                           753
                           99.86
                           99.86
                           0
                           3946.0
     

     
     
22102
                           gb|AAF87743.1|AF276976_1
                           (AF276976) iron transport protein Fiu [Pseudomonas aeruginosa]
                           753
                           99.86
                           99.86
                           0
                           3946.0
     

     
     
22103
                           gb|AAC06215.1|
                           (AF051690) hydroxamate-type ferrisiderophore receptor [Pseudomonas aeruginosa]
                           753
                           99.86
                           99.86
                           0
                           3946.0
     

     
     
22104
                           gb|AAN66486.1|AE016277_5
                           (AE016777) outer membrane ferric siderophore receptor [Pseudomonas putida KT2440]
                           798
                           49.24
                           65.28
                           63
                           1945.0
     

     






      

          
GC ORFID: 43216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4514Glimmer Score: 

          
Start: 4483262Stop: 4481001

          
Length: 2262


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4514 translation of PA4514Homolog Bit Score 1524.0

          
Other Homologs:  t_PA4514 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCGTCAGTCCACGGATACCGCCGTTTCTTCGCAACGTCTGCTGGCTTCTGCCATCGGTGTCGCCATC 
ACCGCCATCGCCGCACCGCAGGCAGCCCACGCCGACGAGGCCGGGCAGAAAAAGACCGACAAGGACCGCGTA 
CTGTCGCTGGATGCGGCCACCATCGtcggCGAGCAGCAggACGAAACCACCTATAACGTCGACCGCTCGGCG 
TCGAAGAAGTACACCGCGCCGCTGCTGGATACGCCGAAGACCGTCACCGTGATCCCGCAACAGGTGATCAAG 
GACACTGGCGCCCTGACCCTGGCCGACGCACTGCGCACCACCCCGGGTATCACCTTCGGCGCGGGCGAGGGC 
GGCAACCCCGCAGGCGACCGGCCATTCATCCGTGGCTTCAACGCCGAGAGCGATACGTTCCTCGACGGTATG 
CGCGACGTCGCCTCGCAAACCCGCGAGGTGTTCAACGTCGAGCAGATCGAGGTCAGCAAGGGCCCGGGCTCG 
GCCTACACCGGCGCCGGCTCCACCGGTGGCAGCCTGAACCTGATCAGCAAGACCGCCAAGCAGGACAACTTC 
ACCGACGCCGGCTTCACCTGGGGCTCAGACCAGACCCGCCGCACTACTCTCGACGTGAACCGGATGATTGGC 
GACAACGCCGCCTTCCGCCTCAACCTGATGAAGCACGATGCCCACGTCGCAGGGCGCGACGAAGTCAGCGTC 
AGCCGCTGGGGCGTGGCTCCGACCGTTACCTTCGGCTTCGACACGCCGACCCGCGCCACCCTGTCCTATTAC 
CATCTCAGCACCGATGACATGCCGGACTACGGCCTGCCGCTGACCAACGTCAACCGCAGCAAAGCCAATCCG 
AGCAAGCCGGCCTCGGTGGATCGCGATAACTTCTATGGCCTGAAGGACCGCGACTACCGCAAGAGCACCACC 
GACAGCGGCACCTTCCGCATCGAGCATGACCTGAACGACAACCTGACCCTGTCGAATAGCACCCGCCTGGTG 
CGCACGACGCTCGACTACATCGTCAGCAACCCCGACGACAGCCGTGGCAACGTTGCCAACGGCTACGTCTAC 
CGTTCGGCGAAAAGCCGCAATTCGACCTCGAAGGGCTGGGTCAACCAGACCGACCTGAAGGCCAACTTCGAA 
ACCGGCTTCATCAAGCACACCCTGGTGACCGGCCTGGAGTTCAGCTACGAGGACGTGCACAACCGTCCGTAC 
GCCATTACTTCCGGTGGCGGCGCCGGCAACACCTGCAATGCACGATTGCTCGCTAGTGGCGACTGCACCAGC 
CTGAATCGCCCGACTCCGGGCGACAACTGGACCGGCAGCATCACCGACGGCCTGGCCTATACCGATACCGAC 
ACCAAGACCAGCGCGGCTTATGTGTTCGATACCCTGAAGCTAAGCGAACAATGGGAGCTGAATCTCGGCCTG 
CGCTACGACGACTTCGATACCAAGTCCAGCGGCTACCAGACGGCTGGCCGCAACGGTCCCGCCGGCTACTTC 
AAGCGCGAGAACAACAGCCACTTCTGGAACTACCAGACCGGTCTGGTCTACAAACCGGCGCCCAACGGCAGC 
ATCTACCTGGCCTGGTCGACCTCGAGCAACCCCACCGGCGAGACCGGCGGCGAGGGCCAGGCGGACATCAGC 
GTAGGCAACAACGGGTTGGATCCGGAGCGTAACCGCAACCTCGAACTGGGTACCAAGTGGGCCTTCTTCGAC 
GATGCTCTGTCGCTGAACGCCGCGCTTTTCCGCACCGACAAGACCAATGCCCGGGTCGCTTCGCCGGATGTT 
TCCACTCTTCAGGTACTGGACGGCGAGCAGCGGGTGCAGGGCGTCGAGCTGGGCTTCAATGGCAAGCTGACC 
GAGAAGTGGAAGGTCTTCGGCGGCTACACCTACCTCGACAGCGAAATCCGCAAGTCGACGGTGAAGAGCGAC 
GAAGGCAACAAGATGCCGCAGACCGCGCAGAACAACTTCACTCTGTGGACCACCTACGATCTGTTGCAGAAC 
TTCACTATCGGCGGTGGTACCACCTATGTGGACAAGCAGTACGGCAACACTGCGAACTCTACCTATATCCCG 
TCCTACTGGCGCTATGACGCCATGGCCAGCTACAAGGTGAGCAAGAACGTCGACCTGCAACTGAACGTGCAG 
AACCTGACCGACAAGCGCTACTTCGACCAGGTCTACAGCACGCACATGGCCCACGTTGCTCCGGGCCGCACG 
GCATTGCTCGGGGTGAACTTCCACTTCTGA