ViewGene
Locus Name:
GeneID:
Location:

GeneID:2139
TrivialName: PA14_52270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52270
PAO1 Ortholog Locus:PA0927
Sequence Length:990
Protein Length:329
Start: 4638585
Stop: 4639574
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04316.1|AE004527_3 (AE004527) D-lactate dehydrogenase (fermentative) [Pseudomonas aeruginosa PAO1]
Identities = 329/329 (100%), Positives = 329/329 (100%)
Sequence:
ATGCGCATCCTGTTCTTCAGCAGCCAGGCCTACGACAGCGAGAGCTTCCAGGCCAGCAACCACCGGCACGGC
TTCGAACTGCACTTCCAGCAGGCCCACCTGCAGGCGGACACGGCGGTCCTCGCCCAGGGCTTCGAAGTAGTC
TGCGCCTTCGTCAACGACGACCTCTCGCGGCCGGTGCTGGAACGCCTGGCCGCCGGCGGCACGCGCCTGGTC
GCCCTGCGCTCGGCCGGCTACAACCACGTCGACCTGGCCGCCGCCGAAGCGCTCGGCCTGCCGGTGGTGCAC
GTCCCGGCCTATTCGCCGCACGCTGTCGCCGAGCACGCGGTCGGCCTGATCCTGACGCTCAACCGGCGCCTG
CACCGCGCCTACAACCGGACCCGCGAGGGCGATTTCTCGCTGCATGGGCTGACCGGCTTCGACCTCCACGGC
AAACGCGTCGGAGTGATCGGCACCGGACAGATCGGCGAGACCTTCGCCCGCATCATGGCCGGCTTCGGCTGC
GAGCTGCTGGCCTACGATCCCTATCCCAATCCGCGCATCCAAGCGCTCGGCGGCCGCTACCTGGCGCTCGAC
GCCCTGCTCGCCGAGTCCGACATCGTCAGCCTGCATTGCCCGCTGACCGCCGACACCCGCCACCTCATCGAC
GCGCAGCGCCTGGCGACGATGAAACCCGGCGCGATGCTGATCAATACCGGCCGTGGCGCCCTGGTGAACGCC
GCGGCGCTGATCGAGGCGCTGAAGAGCGGACAACTGGGCTACCTCGGCCTGGACGTCTATGAAGAGGAAGCG
GATATCTTCTTCGAGGATCGCTCCGACCAGCCCCTGCAGGATGACGTGCTGGCACGCCTGCTGAGCTTCCCC
AACGTGGTGGTGACCGCCCACCAGGCCTTCCTTACCCGCGAGGCGCTGGCGGCGATCGCCGACACCACCCTG
GACAACATCGCCGCCTGGCAGGACGGGACGCCGCGCAATCGGGTCCGGGCCTGA
Translation:
MRILFFSSQAYDSESFQASNHRHGFELHFQQAHLQADTAVLAQGFEVVCAFVNDDLSRPVLERLAAGGTRLV
ALRSAGYNHVDLAAAEALGLPVVHVPAYSPHAVAEHAVGLILTLNRRLHRAYNRTREGDFSLHGLTGFDLHG
KRVGVIGTGQIGETFARIMAGFGCELLAYDPYPNPRIQALGGRYLALDALLAESDIVSLHCPLTADTRHLID
AQRLATMKPGAMLINTGRGALVNAAALIEALKSGQLGYLGLDVYEEEADIFFEDRSDQPLQDDVLARLLSFP
NVVVTAHQAFLTREALAAIADTTLDNIAAWQDGTPRNRVRA*
AnnotationID:2147GeneID:2139
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:47
Gene Name:ldhA
Confidence Code:2
GeneProduct:D-lactate dehydrogenase (fermentative)
Cell Localization:(1) Cytoplasmic
Synonyms:PA0927, ldhD
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1052, COG0111, pfam02826
Secondary Functional Category(ies):Central intermediary metabolism; Energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases. Score: 338, 6e-94
COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases. Score: 227, 1e-60
pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD bi






   
Genomic Context:






   
Comment:


















    ReferenceID:4281




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21427




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2139
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3657
                           PA0927_tr
                           translation of PA0927
                           329
                           99.99
                           99.99
                           0
                           1680.0
     

     
     
112781
                           gb|AAG04316.1|AE004527_3
                           (AE004527) D-lactate dehydrogenase (fermentative) [Pseudomonas aeruginosa PAO1]
                           329
                           99.99
                           99.99
                           0
                           1680.0
     

     
     
112782
                           gb|AAN67270.1|AE016353_10
                           (AE016780) D-lactate dehydrogenase [Pseudomonas putida KT2440]
                           342
                           73.68
                           80.11
                           13
                           1287.0
     

     
     
112783
                           emb|CAD16840.1|
                           (AL646073) PUTATIVE D-LACTATE DEHYDROGENASE (D-LDH) OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           342
                           72.51
                           80.11
                           13
                           1238.0
     

     
     
112784
                           dbj|BAA18694.1|
                           (D90916) 2-hydroxyaciddehydrogenase [Synechocystis sp. PCC 6803]
                           333
                           58.25
                           72.37
                           4
                           986.0
     

     






      

          
GC ORFID: 45141How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0927Glimmer Score: 

          
Start: 315322Stop: 314333

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0927 translation of PA0927Homolog Bit Score 651.0

          
Other Homologs:  t_PA0927 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATCCTGTTCTTCAGCAGCCAGGCCTACGACAGCGAGAGCTTCCAGGCCAGCAACCACCGGCACGGC 
TTCGAACTGCACTTCCAGCAGGCCCACCTGCAGGCGGACACGGCGGTCCTCGCCCAGGGCTTCGAAGTAGTC 
TGCGCCTTCGTCAACGACGACCTCTCGCGGCCGGTGCTGGAACGCCTGGCCGCCGGCGGCACGCGCCTGGTC 
GCCCTGCGCTCGGCCGGCTACAACCACGTCGACCTGGCCGCCGCCGAAGCGCTCGGCCTGCCGGTGGTGCAC 
GTCCCGGCCTATTCGCCGCACGCTGTCGCCGAGCACGCGGTCGGCCTGATCCTGACGCTCAACCGGCGCCTG 
CACCGCGCCTACAACCGGACCCGCGAGGGCGATTTCTCGCTGCATGGGCTGACCGGCTTCGACCTCCACGGC 
AAACGCGTCGGAGTGATCGGCACCGGACAGATCGGCGAGACCTTCGCCCGCATCATGGCCGGCTTCGGCTGC 
GAGCTGCTGGCCTACGATCCCTATCCCAATCCGCGCATCCAAGCGCTCGGCGGCCGCTACCTGGCGCTCGAC 
GCCCTGCTCGCCGAGTCCGACATCGTCAGCCTGCATTGCCCGCTGACCGCCGACACCCGCCACCTCATCGAC 
GCGCAGCGCCTGGCGACGATGAAACCCGGCGCGATGCTGATCAATACCGGCCGTGGCGCCCTGGTGAACGCC 
GCGGCGCTGATCGAGGCGCTGAAGAGCGGACAACTGGGCTACCTCGGCCTGGACGTCTATGAAGAGGAAGCG 
GATATCTTCTTCGAGGATCGCTCCGACCAGCCCCTGCAGGATGACGTGCTGGCACGCCTGCTGAGCTTCCCC 
AACGTGGTGGTGACCGCCCACCAGGCCTTCCTTACCCGCGAGGCGCTGGCGGCGATCGCCGACACCACCCTG 
GACAACATCGCCGCCTGGCAGGACGGGACGCCGCGCAATCGGGTCCGGGCCTGA