ViewGene
Locus Name:
GeneID:
Location:

GeneID:2138
TrivialName: PA14_52840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52840
PAO1 Ortholog Locus:PA0884
Sequence Length:996
Protein Length:331
Start: 4685065
Stop: 4684070
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04273.1|AE004523_1 (AE004523) probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas aeruginosa PAO1]
Identities = 328/331 (99%), Positives = 329/331 (99%)
Sequence:
ATGTTCAAGACGATGGTACGGGCGCTGTTGTGCGCCCTGGCGATCGGTGGCTCCTGCCTGGCGAATGCCGCG
CAGCCTATCGTCATCAAGTTTTCCCACGTGGTCGCGGAAAACACGCCCAAGGGCCAGGGCGCGCTGCTGTTC
AAGAAGCTCGTCGAACAGCGCCTGGGCGGCCGGGTCGAGGTGGACGTCTATCCCAACTCGTCGCTGTTCGGC
GATGGCAAGGAAATGGAGGCGCTGCTGCTGGGCGACGTGCAGATGCTGGCGCCGTCCCTGGCCAAGTTCGAG
CAGTACACGCGCAAGGTGCAGATCTTCGACCTGCCGTTCCTCTTCGACGACATCCAGGCGGTCGACCGCTTC
CAGCGCAGCCCGCAGGGGCGCGCCCTGCTGACCAGCATGCAGGGCAAGGGCATCCTCGGCCTGGCCTACTGG
CACAACGGGATGAAGCAGCTCTCCGCCAATCGCCCGTTGCTGGAGCCGGAAGACGCGCGCGGGCTGAAATTC
CGCGTGCAGGCGTCCGACGTGCTCAACGAGCAGTTCCGCCAGCTCCGCGCGATCTCCCGGAAGATGTCCTTC
GCCGAGGTCTACCAGGGCTTGCAGACCGGCGTGGTGAATGGCACCGAGAACACCTGGTCGAACTACGAGAGC
CAGAAGGTCAACGAGGTGCAGAAGTATTTCACCGAGTCCAACCACGGCCTGGTGGACTACATGGTGATCACC
AACGCGAAGTTCTGGAACGGCCTCCCGGCGGACATCCGCGAAGCGCTGCAGCGGATCATGGACGAGGTCACC
GTGCAGGTGAACATCGAAGCCGAGCGCCTCAACCGCGACGCCCGCCAGCGCATCCTCGCCAGTGGCGTCAGC
GAGATCCATACCCTGAGCCCGCAGCAGCGCGCCGACTGGCGCCAGGCGATGCAGCCGGTATGGCAGAAATTC
CGCGGCAATGTCGGCGCTGACCTGCTCCAGGCCGCCGAAGCTTCCAACCGTCCCGATTGA
Translation:
MFKTMVRALLCALAIGGSCLANAAQPIVIKFSHVVAENTPKGQGALLFKKLVEQRLGGRVEVDVYPNSSLFG
DGKEMEALLLGDVQMLAPSLAKFEQYTRKVQIFDLPFLFDDIQAVDRFQRSPQGRALLTSMQGKGILGLAYW
HNGMKQLSANRPLLEPEDARGLKFRVQASDVLNEQFRQLRAISRKMSFAEVYQGLQTGVVNGTENTWSNYES
QKVNEVQKYFTESNHGLVDYMVITNAKFWNGLPADIREALQRIMDEVTVQVNIEAERLNRDARQRILASGVS
EIHTLSPQQRADWRQAMQPVWQKFRGNVGADLLQAAEASNRPD*
AnnotationID:2146GeneID:2138
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:43
Gene Name:
Confidence Code:3
GeneProduct:probable C4-dicarboxylate-binding periplasmic protein
Cell Localization:(8) Periplasmic
Synonyms:PA0884, dctP
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1638, pfam03480
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1638, DctP, TRAP-type C4-dicarboxylate transport system, periplasmic
component. Score: 344, 1e-95
pfam03480, SBP_bac_7, Bacterial extracellular solute-binding protein, 
family 7. Score: 338, 1e-93






   
Genomic Context:






   
Comment:


















    ReferenceID:4279




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21425




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2138
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3654
                           PA0884_tr
                           translation of PA0884
                           331
                           99.09
                           99.39
                           0
                           1680.0
     

     
     
112765
                           gb|AAG04273.1|AE004523_1
                           (AE004523) probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas aeruginosa PAO1]
                           331
                           99.09
                           99.39
                           0
                           1680.0
     

     
     
3655
                           PA5167_tr
                           translation of PA5167
                           331
                           73.11
                           86.70
                           0
                           1269.0
     

     
     
112766
                           gb|AAG08552.1|AE004929_7
                           (AE004929) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1]
                           331
                           73.11
                           86.70
                           0
                           1269.0
     

     
     
112767
                           emb|CAC44171.1|
                           (AJ313422) probable C4 dicarboxylate binding protein [Pseudomonas stutzeri]
                           331
                           70.69
                           85.19
                           0
                           1229.0
     

     






      

          
GC ORFID: 45140How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0884Glimmer Score: 

          
Start: 268842Stop: 269837

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0884 translation of PA0884Homolog Bit Score 651.0

          
Other Homologs:  t_PA5167 (ORF: BLASTX 493.0), t_PA4616 (ORF: BLASTX 364.0), t_PA0884 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAGACGATGGTACGGGCGCTGTTGTGCGCCCTGGCGATCGGTGGCTCCTGCCTGGCGAATGCCGCG 
CAGCCTATCGTCATCAAGTTTTCCCACGTGGTCGCGGAAAACACGCCCAAGGGCCAGGGCGCGCTGCTGTTC 
AAGAAGCTCGTCGAACAGCGCCTGGGCGGCCGGGTCGAGGTGGACGTCTATCCCAACTCGTCGCTGTTCGGC 
GATGGCAAGGAAATGGAGGCGCTGCTGCTGGGCGACGTGCAGATGCTGGCGCCGTCCCTGGCCAAGTTCGAG 
CAGTACACGCGCAAGGTGCAGATCTTCGACCTGCCGTTCCTCTTCGACGACATCCAGGCGGTCGACCGCTTC 
CAGCGCAGCCCGCAGGGGCGCGCCCTGCTGACCAGCATGCAGGGCAAGGGCATCCTCGGCCTGGCCTACTGG 
CACAACGGGATGAAGCAGCTCTCCGCCAATCGCCCGTTGCTGGAGCCGGAAGACGCGCGCGGGCTGAAATTC 
CGCGTGCAGGCGTCCGACGTGCTCAACGAGCAGTTCCGCCAGCTCCGCGCGATCTCCCGGAAGATGTCCTTC 
GCCGAGGTCTACCAGGGCTTGCAGACCGGCGTGGTGAATGGCACCGAGAACACCTGGTCGAACTACGAGAGC 
CAGAAGGTCAACGAGGTGCAGAAGTATTTCACCGAGTCCAACCACGGCCTGGTGGACTACATGGTGATCACC 
AACGCGAAGTTCTGGAACGGCCTCCCGGCGGACATCCGCGAAGCGCTGCAGCGGATCATGGACGAGGTCACC 
GTGCAGGTGAACATCGAAGCCGAGCGCCTCAACCGCGACGCCCGCCAGCGCATCCTCGCCAGTGGCGTCAGC 
GAGATCCATACCCTGAGCCCGCAGCAGCGCGCCGACTGGCGCCAGGCGATGCAGCCGGTATGGCAGAAATTC 
CGCGGCAATGTCGGCGCTGACCTGCTCCAGGCCGCCGAAGCTTCCAACCGTCCCGATTGA