ViewGene

Locus Name:
GeneID:
Location:

GeneID:2135
TrivialName: PA14_07740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07740
PAO1 Ortholog Locus:PA0593
Sequence Length:987
Protein Length:328
Start: 665304
Stop: 664318
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03982.1|AE004495_6 (AE004495) pyridoxal phosphate biosynthetic protein PdxA [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 326/328 (99%)
Sequence:
GTGAGCCTGCGCTTCGCGCTCACTCCCGGCGAGCCGGCAGGTATCGGACCCGATCTGTGCCTGCTGCTCGCC
CGCTCCGCCCAGCCCCACCCCCTGATCGCCATCGCCAGCCGCACGCTCCTGCAAGAGCGCGCCGGCCAACTG
GGCCTGGCGATCTACCTTAAGGACGTTTCCCCGGCCGCCTGGCCAGAGCGACCGGCCAAGGCCGGCCAACTG
TACGTATGGGATACGCCGCTGGCCGCCCCGGTCCGCCCCGGGCAATTGGACCGCGCCAACGCCGCCTACGTC
CTGGAAACCCTGACCCGCGCCGGCCAGGGCTGCCTCGACGGGCACTTCGCCGGGATGATCACCGCACCGGTG
CACAAGGGCGTGATCAACGAAGCCGGCATCCCCTTTTCCGGCCATACCGAATTCCTCGCCGACCTCACCCAC
ACCGCCCAGGTGGTGATGATGCTGGCCACCCGCGGCCTGCGCGTGGCCCTGGCGACCACCCACCTGCCGCTG
CGCGAGGTCGCCGACGCCATTAGCGACGAGCGCCTGGCCCGGGTCGCGCGCATCCTCCACGCCGACCTGCGC
GACAAGTTCGGCATCGCCCATCCGCGCATCCTGGTCTGCGGACTCAACCCGCACGCCGGCGAAGGCGGTCAC
CTGGGGCGGGAAGAGATCGAGGTGATCGAACCCTGCCTCGAGCGCCTGCGTGGCGAAGGCCTCGACCTGATC
GGCCCGCTGCCGGCCGACACCCTGTTCACTCCCAAGCACCTGGAGCATTGCGACGCGGTGCTGGCGATGTAC
CACGACCAGGGTCTCCCCGTGCTCAAGTACAAGGGCTTCGGTGCCGCCGTGAACGTGACCCTCGGCCTGCCG
ATCATCCGCACCTCTGTCGACCACGGTACCGCCCTCGACCTGGCCGGAAGCGGCCGCATCGATAGCGGCAGC
CTGCAGGTGGCCCTGGAAACCGCCTACCAGATGGCGGCCAGCCGCTGCTGA
Translation:
MSLRFALTPGEPAGIGPDLCLLLARSAQPHPLIAIASRTLLQERAGQLGLAIYLKDVSPAAWPERPAKAGQL
YVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTH
TAQVVMMLATRGLRVALATTHLPLREVADAISDERLARVARILHADLRDKFGIAHPRILVCGLNPHAGEGGH
LGREEIEVIEPCLERLRGEGLDLIGPLPADTLFTPKHLEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLGLP
IIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQMAASRC*
AnnotationID:2143GeneID:2135
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:32
Gene Name:pdxA
Confidence Code:2
GeneProduct:pyridoxal phosphate biosynthetic protein PdxA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04166
Secondary Functional Category(ies):central intermediary metabolism
EC Number:1.1.1.262
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66033.1|AE016232_6 (AE016775) pyridoxal phosphate biosynthetic protein PdxA
           [Pseudomonas putida KT2440]
          Length = 329

 Score =  560 bits (1442), Expect = e-159
 Identities = 276/325 (84%), Positives = 299/325 (92%)

>gb|AAO54094.1| (AE016857) pyridoxal phosphate biosynthetic protein PdxA
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 329

 Score =  527 bits (1358), Expect = e-149
 Identities = 263/321 (81%), Positives = 286/321 (89%)

>gb|AAC73163.1| (AE000115) pyridoxine biosynthesis [Escherichia coli K12]
          Length = 329

 Score =  388 bits (997), Expect = e-107
 Identities = 201/320 (62%), Positives = 233/320 (72%), Gaps = 1/320 (0%)
Structural Features:
pfam04166, PdxA, Pyridoxal phosphate biosynthetic protein PdxA. 
CD-Length = 299 residues, 100.0% aligned
Score =  389 bits (1001), Expect = 2e-109
Identities = 169/300 (56%), Positives = 201/300 (67%), Gaps = 1/300 (0%)
Genomic Context:
Comment:
ReferenceID:14513
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21419
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33875
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2135_cdd.html
URL:
ReferenceID:35270
Author/Investigator(s): Roa BB, Connolly DM, Winkler ME.
Title: Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12.
PubMed: 2670894
MedLine:
Source:
J Bacteriol. 1989 Sep;171(9):4767-77.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2670894
Homologs By Global Alignment
Gene ID:2135

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3650 PA0593_tr translation of PA0593 328 99.39 99.39 0 1681.0
112682 gb|AAG03982.1|AE004495_6 (AE004495) pyridoxal phosphate biosynthetic protein PdxA [Pseudomonas aeruginosa PAO1] 328 99.08 99.39 0 1678.0
112683 gb|AAN66033.1|AE016232_6 (AE016775) pyridoxal phosphate biosynthetic protein PdxA [Pseudomonas putida KT2440] 329 83.89 90.88 1 1436.0
112684 gb|AAO54094.1| (AE016857) pyridoxal phosphate biosynthetic protein PdxA [Pseudomonas syringae pv. tomato str. DC3000] 329 79.93 87.23 1 1352.0
112685 gb|AAQ61891.1| (AE016925) pyridoxal phosphate biosynthesis protein [Chromobacterium violaceum ATCC 12472] 335 63.88 72.23 14 1018.0
GC ORFID: 45137How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0593Glimmer Score:
Start: 6466647Stop: 6465661
Length: 987
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0593 translation of PA0593Homolog Bit Score 652.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6754 (ORF: BLASTX 528.0), t_PA0593 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCCTGCGCTTCGCGCTCACTCCCGGCGAGCCGGCAGGTATCGGACCCGATCTGTGCCTGCTGCTCGCC
CGCTCCGCCCAGCCCCACCCCCTGATCGCCATCGCCAGCCGCACGCTCCTGCAAGAGCGCGCCGGCCAACTG
GGCCTGGCGATCTACCTTAAGGACGTTTCCCCGGCCGCCTGGCCAGAGCGACCGGCCAAGGCCGGCCAACTG
TACGTATGGGATACGCCGCTGGCCGCCCCGGTCCGCCCCGGGCAATTGGACCGCGCCAACGCCGCCTACGTC
CTGGAAACCCTGACCCGCGCCGGCCAGGGCTGCCTCGACGGGCACTTCGCCGGGATGATCACCGCACCGGTG
CACAAGGGCGTGATCAACGAAGCCGGCATCCCCTTTTCCGGCCATACCGAATTCCTCGCCGACCTCACCCAC
ACCGCCCAGGTGGTGATGATGCTGGCCACCCGCGGCCTGCGCGTGGCCCTGGCGACCACCCACCTGCCGCTG
CGCGAGGTCGCCGACGCCATTAGCGACGAGCGCCTGGCCCGGGTCGCGCGCATCCTCCACGCCGACCTGCGC
GACAAGTTCGGCATCGCCCATCCGCGCATCCTGGTCTGCGGACTCAACCCGCACGCCGGCGAAGGCGGTCAC
CTGGGGCGGGAAGAGATCGAGGTGATCGAACCCTGCCTCGAGCGCCTGCGTGGCGAAGGCCTCGACCTGATC
GGCCCGCTGCCGGCCGACACCCTGTTCACTCCCAAGCACCTGGAGCATTGCGACGCGGTGCTGGCGATGTAC
CACGACCAGGGTCTCCCCGTGCTCAAGTACAAGGGCTTCGGTGCCGCCGTGAACGTGACCCTCGGCCTGCCG
ATCATCCGCACCTCTGTCGACCACGGTACCGCCCTCGACCTGGCCGGAAGCGGCCGCATCGATAGCGGCAGC
CTGCAGGTGGCCCTGGAAACCGCCTACCAGATGGCGGCCAGCCGCTGCTGA