ViewGene
Locus Name:
GeneID:
Location:

GeneID:2133
TrivialName: PA14_00760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00760
PAO1 Ortholog Locus:PA0064
Sequence Length:984
Protein Length:327
Start: 75043
Stop: 74060
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03454.1|AE004446_2 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/327 (100%), Positives = 327/327 (100%)
Sequence:
ATGACCGACAATCCCTTCGCCACCCCCACCGCCCCGGTGCAGCCGCCGGCCAGAGAGGTGCCCGCCACCACC
CAGCCCTATGCGTTCATCGCGGTGCTGGCGCTGGTCACCTGCCTGTCCTTCGCCGTGAGCCTGGGCATCCAG
TGGTACAACGACATCGGCGAGATCCGCCAGCGTTTCTCCGAGCACCTGCAACTGATGGCGCCGCACTGGTTC
ACCGGCCTGGTGTTCTACGCGGCGGCCAACCTGCTGGTGCTGCATGCCTACCGCGAGAAGCGGCAGCTCGTC
GAGTTCCGCCCGCTGGCGCTGCTGCTGATCGGCTACGGCCTACTCAACCTGGTCTGCGGCATGCTCGCCGGG
ATCGGCCTGGCACCGCTGACGCTGCCGTTCTACCAGTGGGTGACGGCGCAATCCAGCTACGGCGTCTGGCTG
ATGGCGTTCAACGAAGCGATGAGCTGGGTCTACCTGCTCCTGGGCAGCCTGCTGCCGTTGGGGCTGGTGCTG
CTCGGCAGCCGGGTGAACTCGCCGCGCCTGGCCGAAGGGGAAGAAGCCCGCGTCGCTGCCTGGCAGGTCGCC
CTGGGCGCCGCGCTGTGTTTCGCCACGCTGTGCTTCAAGCTGATGCAGTTCCTTCCCTACGCCCTGCTGCGC
TACGACGAGCCTTGGCTATACGGCCTGTACCTGAGCGGCGTGGCGTTGCCCGCGGCGCTGCTCTTCGGTGCC
GTCTGCACGCGCCTGCCGGCGCGCCTGCAGCGCTTCGCCGCCGGCCGCGCGCTGCTGCTCGCGGTGGTCGCC
ATGCTGCTCTGGAGCGTGGCGCTGCTGGCGGTCGGCGGGGGGCTGGCGCTGCTGATGATCCTCGGCCTGGCG
CCCGCTGGCATCGGCTATACGCTGCTGGTGGCGCTGCTCGGCGTCGGCCTGTTGGCGCTGCTCTGGCCGATC
GGCCGGCTGGCCACGCGCTGGTGCTACGCCGACCAGCTCGCCGCCTGA
Translation:
MTDNPFATPTAPVQPPAREVPATTQPYAFIAVLALVTCLSFAVSLGIQWYNDIGEIRQRFSEHLQLMAPHWF
TGLVFYAAANLLVLHAYREKRQLVEFRPLALLLIGYGLLNLVCGMLAGIGLAPLTLPFYQWVTAQSSYGVWL
MAFNEAMSWVYLLLGSLLPLGLVLLGSRVNSPRLAEGEEARVAAWQVALGAALCFATLCFKLMQFLPYALLR
YDEPWLYGLYLSGVALPAALLFGAVCTRLPARLQRFAAGRALLLAVVAMLLWSVALLAVGGGLALLMILGLA
PAGIGYTLLVALLGVGLLALLWPIGRLATRWCYADQLAA*
AnnotationID:2141GeneID:2133
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0064
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21415




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2133
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3648
                           PA0064_tr
                           translation of PA0064
                           327
                           99.99
                           99.99
                           0
                           1682.0
     

     
     
112679
                           gb|AAG03454.1|AE004446_2
                           (AE004446) hypothetical protein PA0064 [Pseudomonas aeruginosa PAO1]
                           327
                           99.99
                           99.99
                           0
                           1682.0
     

     






      

          
GC ORFID: 45135How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0064Glimmer Score: 

          
Start: 5876380Stop: 5875397

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0064 translation of PA0064Homolog Bit Score 652.0

          
Other Homologs:  t_PA0064 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACAATCCCTTCGCCACCCCCACCGCCCCGGTGCAGCCGCCGGCCAGAGAGGTGCCCGCCACCACC 
CAGCCCTATGCGTTCATCGCGGTGCTGGCGCTGGTCACCTGCCTGTCCTTCGCCGTGAGCCTGGGCATCCAG 
TGGTACAACGACATCGGCGAGATCCGCCAGCGTTTCTCCGAGCACCTGCAACTGATGGCGCCGCACTGGTTC 
ACCGGCCTGGTGTTCTACGCGGCGGCCAACCTGCTGGTGCTGCATGCCTACCGCGAGAAGCGGCAGCTCGTC 
GAGTTCCGCCCGCTGGCGCTGCTGCTGATCGGCTACGGCCTACTCAACCTGGTCTGCGGCATGCTCGCCGGG 
ATCGGCCTGGCACCGCTGACGCTGCCGTTCTACCAGTGGGTGACGGCGCAATCCAGCTACGGCGTCTGGCTG 
ATGGCGTTCAACGAAGCGATGAGCTGGGTCTACCTGCTCCTGGGCAGCCTGCTGCCGTTGGGGCTGGTGCTG 
CTCGGCAGCCGGGTGAACTCGCCGCGCCTGGCCGAAGGGGAAGAAGCCCGCGTCGCTGCCTGGCAGGTCGCC 
CTGGGCGCCGCGCTGTGTTTCGCCACGCTGTGCTTCAAGCTGATGCAGTTCCTTCCCTACGCCCTGCTGCGC 
TACGACGAGCCTTGGCTATACGGCCTGTACCTGAGCGGCGTGGCGTTGCCCGCGGCGCTGCTCTTCGGTGCC 
GTCTGCACGCGCCTGCCGGCGCGCCTGCAGCGCTTCGCCGCCGGCCGCGCGCTGCTGCTCGCGGTGGTCGCC 
ATGCTGCTCTGGAGCGTGGCGCTGCTGGCGGTCGGCGGGGGGCTGGCGCTGCTGATGATCCTCGGCCTGGCG 
CCCGCTGGCATCGGCTATACGCTGCTGGTGGCGCTGCTCGGCGTCGGCCTGTTGGCGCTGCTCTGGCCGATC 
GGCCGGCTGGCCACGCGCTGGTGCTACGCCGACCAGCTCGCCGCCTGA