ViewGene
Locus Name:
GeneID:
Location:

GeneID:2132
TrivialName: PA14_72620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72620
PAO1 Ortholog Locus:PA5503
Sequence Length:1008
Protein Length:335
Start: 6468547
Stop: 6469554
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08888.1|AE004963_1 (AE004963) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 335/335 (100%), Positives = 335/335 (100%)
Sequence:
GTGATCGAATTCCACGACGTCCACAAGACCTATCGAGTTGCCGGTCGGGAAATCCCCGCCTTGCAACCGACC
CGCCTGAACATCCAGGCCGGGCAGATTTTCGGCCTGATCGGCCATTCCGGTGCCGGCAAGAGCACCCTGCTG
CGCCTGATCAACCGCCTCGAGGAGCCCAGCGGCGGCCGCATCCTGGTCGAGGGCGAAGACGTCACCGCCCTC
GACGCCGAAGGCCTGCGCCGTTTCCGCCAGCGCGTCGGGATGATCTTCCAGCACTTCAACCTGCTGTCCTCG
AAGACCGTCGCCGACAACATCGCCATGCCCCTGCGCCTGGCCGGCGGCTTCAGCCGTGCCGAAGTCGATGCG
CGGGTCTCCGAGCTGCTCGCGCGGGTCGGCCTGTCCGACCACGCGCGCAAGTATCCGGCCCAGCTGTCCGGC
GGACAGAAACAGCGCGTCGGCATCGCTCGCGCCCTGGCCTGCCGGCCGAGCATCCTGCTCTGCGACGAGGCC
ACCAGCGCCCTCGATCCGCAGACCACCGCCTCGGTCCTGCAACTGCTGGCGGAAATCAATCGCGAGCTGAAG
CTGACCATCGTCCTCATCACCCACGAGATGGACGTGATCCGTCGTGTCTGCGACCAGGTCGCGGTCATGGAC
GGCGGCGCCATCGTCGAGCAGGGCGATGTCGCCGATGTCTTCCTCCATCCGCAGCACCCGACCACCCGCCGC
TTCGTGTTCGAGGCCGAACGGGTCGACGAGGACGAGCGCCACGACGATTTCGCCCACGTGCCGGGTCTCATC
CTGCGCCTGACCTTCCGCGGCGAAGCCACCTATGCGCCGCTGCTGGGCACCGTGGCGCGGCAGACCGGGGTC
GACTACAGCATCCTTTCCGGACGCATCGACCGCATCAAGGACACGCCCTACGGCCAGCTGACCCTGGCCCTG
GTCGGCGGTGACCTGGAAGCCGCCATGAGCCAGTTGAACGCCGCTGACGTACATGTGGAGGTACTGCGCTGA
Translation:
MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGGRILVEGEDVTAL
DAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDARVSELLARVGLSDHARKYPAQLSG
GQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMD
GGAIVEQGDVADVFLHPQHPTTRRFVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGV
DYSILSGRIDRIKDTPYGQLTLALVGGDLEAAMSQLNAADVHVEVLR*
AnnotationID:2140GeneID:2132
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:abc
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1135,COG1126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58688.1| (AE016875) D-methionine ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 335

 Score =  548 bits (1413), Expect = e-155
 Identities = 273/335 (81%), Positives = 306/335 (91%)

>gb|AAN65748.1|AE016200_12 (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 335

 Score =  548 bits (1411), Expect = e-155
 Identities = 275/335 (82%), Positives = 305/335 (91%)

>gb|AAM42900.1| (AE012484) ABC transporter ATP-binding protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 335

 Score =  478 bits (1230), Expect = e-134
 Identities = 247/335 (73%), Positives = 279/335 (83%), Gaps = 1/335 (0%)








 
Structural Features:
COG1135, AbcC, ABC-type metal ion transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 339 residues,  99.7% aligned
Score =  455 bits (1172), Expect = 3e-129
Identities = 193/339 (56%), Positives = 243/339 (71%), Gaps = 5/339 (1%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  97.9% aligned
Score =  272 bits (697), Expect = 4e-74
Identities = 105/242 (43%), Positives = 154/242 (63%), Gaps = 7/242 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21413




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33259




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2132_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2132
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3642
                           PA5503_tr
                           translation of PA5503
                           335
                           99.99
                           99.99
                           0
                           1682.0
     

     
     
112121
                           gb|AAG08888.1|AE004963_1
                           (AE004963) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           335
                           99.70
                           99.99
                           0
                           1679.0
     

     
     
112123
                           gb|AAN65748.1|AE016200_12
                           (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           335
                           81.79
                           91.04
                           0
                           1407.0
     

     
     
112122
                           gb|AAO58688.1|
                           (AE016875) D-methionine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           81.19
                           91.34
                           0
                           1409.0
     

     
     
112124
                           gb|AAM42900.1|
                           (AE012484) ABC transporter ATP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           336
                           73.21
                           83.03
                           2
                           1228.0
     

     






      

          
GC ORFID: 45134How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5503Glimmer Score: 

          
Start: 5732236Stop: 5733243

          
Length: 1008


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5503 translation of PA5503Homolog Bit Score 652.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3198 (ORF: BLASTX 550.0), t_PA5503 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGAATTCCACGACGTCCACAAGACCTATCGAGTTGCCGGTCGGGAAATCCCCGCCTTGCAACCGACC 
CGCCTGAACATCCAGGCCGGGCAGATTTTCGGCCTGATCGGCCATTCCGGTGCCGGCAAGAGCACCCTGCTG 
CGCCTGATCAACCGCCTCGAGGAGCCCAGCGGCGGCCGCATCCTGGTCGAGGGCGAAGACGTCACCGCCCTC 
GACGCCGAAGGCCTGCGCCGTTTCCGCCAGCGCGTCGGGATGATCTTCCAGCACTTCAACCTGCTGTCCTCG 
AAGACCGTCGCCGACAACATCGCCATGCCCCTGCGCCTGGCCGGCGGCTTCAGCCGTGCCGAAGTCGATGCG 
CGGGTCTCCGAGCTGCTCGCGCGGGTCGGCCTGTCCGACCACGCGCGCAAGTATCCGGCCCAGCTGTCCGGC 
GGACAGAAACAGCGCGTCGGCATCGCTCGCGCCCTGGCCTGCCGGCCGAGCATCCTGCTCTGCGACGAGGCC 
ACCAGCGCCCTCGATCCGCAGACCACCGCCTCGGTCCTGCAACTGCTGGCGGAAATCAATCGCGAGCTGAAG 
CTGACCATCGTCCTCATCACCCACGAGATGGACGTGATCCGTCGTGTCTGCGACCAGGTCGCGGTCATGGAC 
GGCGGCGCCATCGTCGAGCAGGGCGATGTCGCCGATGTCTTCCTCCATCCGCAGCACCCGACCACCCGCCGC 
TTCGTGTTCGAGGCCGAACGGGTCGACGAGGACGAGCGCCACGACGATTTCGCCCACGTGCCGGGTCTCATC 
CTGCGCCTGACCTTCCGCGGCGAAGCCACCTATGCGCCGCTGCTGGGCACCGTGGCGCGGCAGACCGGGGTC 
GACTACAGCATCCTTTCCGGACGCATCGACCGCATCAAGGACACGCCCTACGGCCAGCTGACCCTGGCCCTG 
GTCGGCGGTGACCTGGAAGCCGCCATGAGCCAGTTGAACGCCGCTGACGTACATGTGGAGGTACTGCGCTGA