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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08237.1|AE004898_8 (AE004898) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 330/332 (99%), Positives = 332/332 (100%)
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Sequence:
ATGTCGGTGGTACGCATCGGCCCATATACACTGCCCAACAGACTGATCCTCGCGCCGATGGCCGGGGTGACC
GATCGTCCGTTCCGTCAGCTTTGCCGTCGCCTTGGCGCCGGGATGGTGGTATCGGAGATGGTGACCAGCGAC
GTCCGCCTGTGGAACAGCCGCAAGTCGCGCCTGCGCCTGATCCACGATGGCGAGGACGAGCCGCGCTCGGTG
CAGATCGCCGGCGGCGATCCGGCCATGCTGGCCGAGGCCGCTCAGCGCAATGTGGAACTCGGTGCGCAGATC
ATCGACATCAACATGGGCTGCCCGGCGAAGAAGGTATGCAACAAGGCAGCGGGGTCCGCCCTGCTGCGGGAC
GAGGCGCTGGTCGCCGAGATCCTCGATGCCGTGGTCAGGGCGGTCGACGTACCGGTCACCCTGAAGATCCGG
ACCGGCTGGGACCGGGACAACCGTAACGGCGTCAGCGTCGCGAGGCTCGCCGAACAGGCGGGGATCCAGGCT
CTTGCGGTACATGGCCGGACCCGCGCCGACCTGTACACCGGGGAGGCGGAGTACGAGACCATCGCGGCGATC
AAGCAGGCCGTGTCGATACCGGTGTTCGCCAATGGCGACATCGATTCGCCGGAGAAGGCCAGGAAAGTCATC
GAGCAGACCGGGGTGGATGCCCTGCTGATCGGTCGGGCCGCCCAGGGAAGACCGTGGATTTTCCGCGAGATC
GACCATTACCTGCGGACCGGCGAGCACCTGCCGGCGGCGCCGCTTCCCGAAGTGCAGAGCATCCTGCTCGAA
CACCTCGCGGAGCTGCACCTTTTTTATGGGGAAGAAATGGGTGTGCGGATCGCCCGCAAGCATGTGGGGTGG
TATCTCGCGACTCTGCCGGGCGCAAGGGAATTCCGCGCCCAGTTCAATCGTTTGCAGGACACGGATGCGCAG
TGCGCCAGCGTCAGGCAGTTCTTCGCCGAGCGCCAGAACAACGGAACAGGGGTGGCCGCATGA |
Translation:
MSVVRIGPYTLPNRLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSV
QIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVRAVDVPVTLKIR
TGWDRDNRNGVSVARLAEQAGIQALAVHGRTRADLYTGEAEYETIAAIKQAVSIPVFANGDIDSPEKARKVI
EQTGVDALLIGRAAQGRPWIFREIDHYLRTGEHLPAAPLPEVQSILLEHLAELHLFYGEEMGVRIARKHVGW
YLATLPGAREFRAQFNRLQDTDAQCASVRQFFAERQNNGTGVAA* |
AnnotationID:2139 | GeneID:2131 |
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Modification Date/Time: |
2005-03-11 09:09:07 |
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GeneProduct: | putative tRNA-dihydrouridine synthase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (26) Translation, post-translational modification, degradation |
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Alternate Gene Product Name: | putative TIM-barrel protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | translation, ribosomal structure and biogenesis |
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Homology: | >gb|AAO58293.1| (AE016873) TIM-barrel protein, putative, NifR3 family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 337
Score = 532 bits (1371), Expect = e-150
Identities = 264/322 (81%), Positives = 294/322 (91%)
>gb|AAN70389.1|AE016680_9 (AE016792) TIM-barrel protein, putative, NifR3 family [Pseudomonas
putida KT2440]
Length = 337
Score = 532 bits (1371), Expect = e-150
Identities = 270/337 (80%), Positives = 296/337 (87%), Gaps = 5/337 (1%)
>emb|CAD84785.1| (BX321859) Predicted TIM-barrel enzymes, possibly dehydrogenases,
nifR3 family [Nitrosomonas europaea ATCC 19718]
Length = 337
Score = 423 bits (1088), Expect = e-118
Identities = 205/324 (63%), Positives = 255/324 (78%)
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Structural Features: | pfam01207, Dus, Dihydrouridine synthase (Dus).
CD-Length = 309 residues, 100.0% aligned
Score = 348 bits (893), Expect = 8e-97
Identities = 160/310 (51%), Positives = 206/310 (66%), Gaps = 1/310 (0%)
COG0042, COG0042, tRNA-dihydrouridine synthase
[Translation, ribosomal structure and biogenesis]
CD-Length = 323 residues, 98.5% aligned
Score = 345 bits (886), Expect = 5e-96
Identities = 162/321 (50%), Positives = 212/321 (66%), Gaps = 6/321 (1%) |
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