ViewGene
Locus Name:
GeneID:
Location:

GeneID:2130
TrivialName: PA14_51340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51340
PAO1 Ortholog Locus:PA1003
Sequence Length:999
Protein Length:332
Start: 4562837
Stop: 4563835
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04392.1|AE004533_3 (AE004533) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 331/332 (99%), Positives = 331/332 (99%)
Sequence:
ATGCCTATTCATAACCTGAATCACGTGAACATGTTCCTCCAGGTCATCGCCTCCGGTTCGATTTCCTCCGCT
GCGCGGATCCTGCGCAAGTCGCACACCGCGGTCAGCTCGGCGGTCAGCAACCTGGAAATCGACCTGTGCGTG
GAGCTGGTCCGTCGGGACGGCTACAAGGTCGAACCCACCGAGCAGGCGCTTCGCCTGATCCCTTACATGCGC
AGCCTGCTGAACTACCAGCAGCTGATCGGCGACATCGCCTTCAATCTCAACAAGGGTCCGCGCAATCTCCGG
GTGCTGCTGGACACCGCCATCCCGCCGTCGTTCTGCGATACGGTGAGCAGCGTACTGCTCGACGATTTCAAC
ATGGTCAGCCTGATACGCACCTCGCCCGCCGATAGCCTGGCGACGATCAAGCAGGACAACGCGGAAATCGAT
ATCGCCATCACCATCGACGAGGAACTGAAGATCTCCCGCTTCAACCAGTGCGTGCTCGGCTACACCAAGGCG
TTCGTCGTCGCCCATCCGCAGCACCCGTTGTGCAATGCCTCCCTGCACAGCATCGCGAGCCTGGCCAATTAC
CGGCAGATCAGCCTCGGCAGCCGCTCCGGGCAGCATTCGAACCTGCTGCGGCCGGTCAGCGACAAGGTGCTC
TTCGTGGAAAACTTCGACGACATGCTGCGTCTGGTGGAAGCCGGCGTCGGATGGGGCATCGCGCCGCATTAT
TTCGTCGAGGAACGCCTGCGCAACGGTACCCTGGCAGTCCTCAGCGAACTCTACGAACCGGGCGGCATCGAC
ACCAAGGTGTATTGCTACTACAACACCGCGCTGGAATCCGAGCGCAGCTTCCTGCGCTTTCTCGAAAGCGCC
CGCCAGCGCCTGCGCGAACTGGGCCGCCAGCGTTTCGACGATGCGCCGGCCTGGCAACCGAGCATCGTCGAA
ACGGTGCAGCGCCGCTCAGGCCCGAAGGCGCTCGCGTACCGCCAGCGCGCCGCACCAGAGTAG
Translation:
MPIHNLNHVNMFLQVIASGSISSAARILRKSHTAVSSAVSNLEIDLCVELVRRDGYKVEPTEQALRLIPYMR
SLLNYQQLIGDIAFNLNKGPRNLRVLLDTAIPPSFCDTVSSVLLDDFNMVSLIRTSPADSLATIKQDNAEID
IAITIDEELKISRFNQCVLGYTKAFVVAHPQHPLCNASLHSIASLANYRQISLGSRSGQHSNLLRPVSDKVL
FVENFDDMLRLVEAGVGWGIAPHYFVEERLRNGTLAVLSELYEPGGIDTKVYCYYNTALESERSFLRFLESA
RQRLRELGRQRFDDAPAWQPSIVETVQRRSGPKALAYRQRAAPE*
AnnotationID:2138GeneID:2130
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:35
Gene Name:mvfR
Confidence Code:1
GeneProduct:Transcriptional regulator MvfR
Cell Localization:()
Synonyms:pqsR 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):Quinolone signal response
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
       CD-Length = 297 residues, 100.0% aligned
       Score = 95.4 bits (236), Expect = 9e-21






   
Genomic Context:
regulates phnAB operon 






   
Comment:


















    ReferenceID:4263




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21409




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32110




  
Author/Investigator(s):
        Cao H, Krishnan G, Goumnerov B, Tsongalis J, Tompkins R, Rahme LG.





  
Title:
        A quorum sensing-associated virulence gene of Pseudomonas aeruginosa encodes a LysR-like transcription regulator with a unique self-regulatory mechanism.





  
PubMed:
        11724939


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14613-8. Epub 2001 Nov 27.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2130
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3640
                           PA1003_tr
                           translation of PA1003
                           332
                           99.69
                           99.69
                           0
                           1684.0
     

     
     
112031
                           gb|AAG04392.1|AE004533_3
                           (AE004533) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           332
                           99.69
                           99.69
                           0
                           1684.0
     

     
     
112032
                           gb|AAB88447.1|
                           (AF031571) unknown [Pseudomonas aeruginosa]
                           351
                           88.60
                           89.17
                           26
                           1567.0
     

     






      

          
GC ORFID: 45132How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1003Glimmer Score: 

          
Start: 391070Stop: 390072

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1003 translation of PA1003Homolog Bit Score 653.0

          
Other Homologs:  t_PA1003 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTATTCATAACCTGAATCACGTGAACATGTTCCTCCAGGTCATCGCCTCCGGTTCGATTTCCTCCGCT 
GCGCGGATCCTGCGCAAGTCGCACACCGCGGTCAGCTCGGCGGTCAGCAACCTGGAAATCGACCTGTGCGTG 
GAGCTGGTCCGTCGGGACGGCTACAAGGTCGAACCCACCGAGCAGGCGCTTCGCCTGATCCCTTACATGCGC 
AGCCTGCTGAACTACCAGCAGCTGATCGGCGACATCGCCTTCAATCTCAACAAGGGTCCGCGCAATCTCCGG 
GTGCTGCTGGACACCGCCATCCCGCCGTCGTTCTGCGATACGGTGAGCAGCGTACTGCTCGACGATTTCAAC 
ATGGTCAGCCTGATACGCACCTCGCCCGCCGATAGCCTGGCGACGATCAAGCAGGACAACGCGGAAATCGAT 
ATCGCCATCACCATCGACGAGGAACTGAAGATCTCCCGCTTCAACCAGTGCGTGCTCGGCTACACCAAGGCG 
TTCGTCGTCGCCCATCCGCAGCACCCGTTGTGCAATGCCTCCCTGCACAGCATCGCGAGCCTGGCCAATTAC 
CGGCAGATCAGCCTCGGCAGCCGCTCCGGGCAGCATTCGAACCTGCTGCGGCCGGTCAGCGACAAGGTGCTC 
TTCGTGGAAAACTTCGACGACATGCTGCGTCTGGTGGAAGCCGGCGTCGGATGGGGCATCGCGCCGCATTAT 
TTCGTCGAGGAACGCCTGCGCAACGGTACCCTGGCAGTCCTCAGCGAACTCTACGAACCGGGCGGCATCGAC 
ACCAAGGTGTATTGCTACTACAACACCGCGCTGGAATCCGAGCGCAGCTTCCTGCGCTTTCTCGAAAGCGCC 
CGCCAGCGCCTGCGCGAACTGGGCCGCCAGCGTTTCGACGATGCGCCGGCCTGGCAACCGAGCATCGTCGAA 
ACGGTGCAGCGCCGCTCAGGCCCGAAGGCGCTCGCGTACCGCCAGCGCGCCGCACCAGAGTAG