ViewGene

Locus Name:
GeneID:
Location:

GeneID:213
TrivialName: PA14_46240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46240
PAO1 Ortholog Locus:PA1408
Sequence Length:2424
Protein Length:807
Start: 4111189
Stop: 4113612
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04797.1|AE004570_5 (AE004570) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 805/807 (99%), Positives = 806/807 (99%)
Sequence:
ATGAGGCGCGCCAGCCTGCATATGTTGCTCTGCCAGTTCGCCATGGCCCTGGGCCTGCTCCTGAGCCTGGGC
AGCGAGGCCTGGGCCGCCAGGCCGGCTCTGCAGGCGGCCGTCGACCTGGAAGCGCCGGCCGCCCTGGCCGAG
GACGCCAGCCTCGACCAGCTCAACGCGCAACTCGACCTGATCCGCCAGCGCGTCACCGCCGACGCCAGCGAC
GACCTCCTCGCCGAGTTGCGCCAGAGCGCGCTGCAAGTCCAGCGCCAGGCCGACGCCCTGCTCGCGCTGCGG
GTGGCCGACATCGAGCGGCTCGACGATCAGTTGAAAGTGATCGGCCCGCCGCAGCCCGACGAGGCGGAAAGC
CTCGCCGCCCAGCGCCAGGCCCTGACCCGGCAGAAGAACGCCCTGCTCGATGACGAACGCCAGGCCACCCAG
CTCGGCCAGTCGTCCCGCGACCTGGCGGCACAGATCGTCAACCTGCGCCGCAGCCTGTTCAACTCGCAGATC
AGCAGCCGCGCGGCGACACCGTTCAGCCCGAGCTTCTGGTCGACCCTGATCCGTCCCACCGACGACGACCTG
CGCCGTCTGGACAAGCTGAAGGCGGAGGCCCTGGTCGCCTTCGACAGCGCCATCGCGCCCGGACACCGCTGG
GCCTTCGCCGGAACCCTGCTGGCCACCGTGCTGGTCTGGAGCTTCGGCCGCCGCCTGCTGGAGCGCATGCTT
ACCTGGGCGATGATCCGCTGGCTGCCGGAAGGCCGCCTGCGGCGCAGCGCCCTGGCCCTGGCGGTCGGGCTG
GCGACCATCCTGACCATCGTCGGCGCGGTGTCGCTGATGCGCTGGGGCCTGGAAAGCAACGCCAGCCTGAGC
CCCGACATGGCCAGCCTGACCGATCAACTGGTGAGCCTGGCGACCTTCTGCGCCTTCATCGCCGGCCTCGGC
CGCGCCCTGCTGATGCTGCCGCGACCATCCTGGCGGCTGCCGGCGATCCCGGACAGGATCGCCAGCGCCCTC
GGCCCGTTCCCGGCGATCCTCGCAGTGGCGCTGATGCTGGTGGCCACCGAGGAACGGATCAACAGCGTCACC
GGCACCAGCCTGGCCCTGACCGTCGCCCTCAACGGCCTGACCGCGCTGGTCACCGCGCTGATCTTCGCCGCC
GCCCTGCTGCGCTACCACCATGTGCGGCGCAAGCACGACCTGGAGCGGCCAGGCGGGATCGCCGGGCTGATC
CCCTTCGTCGCCTCGGTATGGATCGCGGCGATCCTCCTCGCCCTGTTCACCGGCTACCTGTCGCTGGCCTAC
TTCCTCACCGGCAAGCTGCTGTGGATCAGCGTGATCGCGGCCACCACCTACCTGCTGATCGCTTTCTTCGGC
GACATCTGCGAAACCCTGCTCTCGCCCAAGCACCCCAGCGGCCTGGCGCTGGCCAATGCGCTCGGCCTGTCG
CCGCGCCACCAGGCCCAGGCCAGCACGGTGCTGGCCGGGGTCGGCCGCACCCTGCTGCTGCTCACCGCGCTG
CTGCTGGCCTTCCTTCCGGTCGGCTCGAGCCCCAGCGAACTGCTGCAGGGCTTCGCCCAACTGGGCGAAAGC
AGCAAGACCCTGGGCAACCTGAACATCGTCCCGCAGGACATCCTGGTCGCCCTGCTGCTGTTCGTCGGCGGC
CTGTTCGCCCTGCGCATCGTCAAGCGCTGGCTGAGCGAGCGGTTGCTGCCGGAAACCAACATGGACGCCGGC
ATGCGCGCCTCGCTGGTGACCCTGGTCGGCTACCTCGGCTTCGTGCTCCTGGCGATGCTGGTGATGTCCACC
CTGCGCATCAACCTGACCAGCCTGACCTGGGTGGTCAGCGCCCTCTCGGTAGGCATCGGCTTCGGCCTGCAG
GCCATCGTGCAGAACTTCATTTCCGGCCTGATCCTGCTGACCGAGCGGCCAGTGAAGGTCGGCGACTGGGTC
AGCCTGGGCGGGGTCGAGGGCGATATCCGGCGGATCAACGTGCGCGCCACCGAGATCCAGATGGGCGACCGC
TCCACGGTGATCGTGCCGAACTCGCAGTTCATCTCCCAGACCGTGCGCAACGTGACCATGGGCAATGCCCTC
GGGGTGGTCGGGGTGAACCTGACCCTGCCGCTGGACACCGACGCGATGAAGGTCCGCGAACTGCTCTTGCAG
GCCTTCGCCGAACACCCGGCGATCCTCGACGCACCGGCGCCCTCGGTGACGTTCAAGGATCTCGCCAGCAAC
GGCCTGGTGCTCAACGCCAGCGGCTTCGTCAACAGCCCGCGTTCGGTGGCCGGCGCGCGCAGCGACCTGCTC
TTCACCATCCTCGACCGCTTGCGCAGCGAAGGCATCGCGCTGTCCTCGCCACAGAGCCTGCTGATGATCCAG
GATGGCGGCCCGGCCAGCGCCGCGCCTGCGCCCGCGACGCCCGATTGA
Translation:
MRRASLHMLLCQFAMALGLLLSLGSEAWAARPALQAAVDLEAPAALAEDASLDQLNAQLDLIRQRVTADASD
DLLAELRQSALQVQRQADALLALRVADIERLDDQLKVIGPPQPDEAESLAAQRQALTRQKNALLDDERQATQ
LGQSSRDLAAQIVNLRRSLFNSQISSRAATPFSPSFWSTLIRPTDDDLRRLDKLKAEALVAFDSAIAPGHRW
AFAGTLLATVLVWSFGRRLLERMLTWAMIRWLPEGRLRRSALALAVGLATILTIVGAVSLMRWGLESNASLS
PDMASLTDQLVSLATFCAFIAGLGRALLMLPRPSWRLPAIPDRIASALGPFPAILAVALMLVATEERINSVT
GTSLALTVALNGLTALVTALIFAAALLRYHHVRRKHDLERPGGIAGLIPFVASVWIAAILLALFTGYLSLAY
FLTGKLLWISVIAATTYLLIAFFGDICETLLSPKHPSGLALANALGLSPRHQAQASTVLAGVGRTLLLLTAL
LLAFLPVGSSPSELLQGFAQLGESSKTLGNLNIVPQDILVALLLFVGGLFALRIVKRWLSERLLPETNMDAG
MRASLVTLVGYLGFVLLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQAIVQNFISGLILLTERPVKVGDWV
SLGGVEGDIRRINVRATEIQMGDRSTVIVPNSQFISQTVRNVTMGNALGVVGVNLTLPLDTDAMKVRELLLQ
AFAEHPAILDAPAPSVTFKDLASNGLVLNASGFVNSPRSVAGARSDLLFTILDRLRSEGIALSSPQSLLMIQ
DGGPASAAPAPATPD*
AnnotationID:223GeneID:213
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:12
Gene Name:
Confidence Code:3
GeneProduct:putative mechanosensitive ion channel family protein
Cell Localization:()
Synonyms:PA1408
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3264,pfam00924,COG0668
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66332.1|AE016261_9 (AE016776) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 855

 Score = 1042 bits (2694), Expect = 0.0
 Identities = 550/797 (69%), Positives = 644/797 (80%), Gaps = 5/797 (0%)

>gb|AAO55371.1| (AE016862) mechanosensitive ion channel family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 804

 Score = 1041 bits (2693), Expect = 0.0
 Identities = 545/807 (67%), Positives = 650/807 (80%), Gaps = 4/807 (0%)
Structural Features:
COG3264, COG3264, Small-conductance mechanosensitive channel 
[Cell envelope biogenesis, outer membrane]
CD-Length = 835 residues,  97.2% aligned
Score =  602 bits (1553), Expect = 5e-173
Identities = 267/824 (32%), Positives = 372/824 (45%), Gaps = 29/824 (3%)

pfam00924, MS_channel, Mechanosensitive ion channel.
CD-Length = 205 residues,  99.0% aligned
Score =  134 bits (340), Expect = 3e-32
Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 5/204 (2%)

COG0668, MscS, Small-conductance mechanosensitive channel 
[Cell envelope biogenesis, outer membrane]
CD-Length = 316 residues,  98.4% aligned
Score =  122 bits (307), Expect = 2e-28
Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 9/313 (2%)
Genomic Context:
Comment:
ReferenceID:429
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17571
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37426
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:213_cdd.html
URL:
Homologs By Global Alignment
Gene ID:213

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
374 PA1408_tr translation of PA1408 807 99.75 99.87 0 3951.0
22098 gb|AAG04797.1|AE004570_5 (AE004570) hypothetical protein PA1408 [Pseudomonas aeruginosa PAO1] 807 99.75 99.87 0 3951.0
22100 gb|AAO55371.1| (AE016862) mechanosensitive ion channel family protein [Pseudomonas syringae pv. tomato str. DC3000] 817 66.82 79.55 23 2702.0
22099 gb|AAN66332.1|AE016261_9 (AE016776) membrane protein, putative [Pseudomonas putida KT2440] 865 64.16 75.14 68 2702.0
GC ORFID: 43215How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1408Glimmer Score:
Start: 842720Stop: 840297
Length: 2424
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1408 translation of PA1408Homolog Bit Score 1526.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7607 (ORF: BLASTX 1040.0), t_PA1408 (ORF: GLIMMER)
GC ORF Sequence
ATGAGGCGCGCCAGCCTGCATATGTTGCTCTGCCAGTTCGCCATGGCCCTGGGCCTGCTCCTGAGCCTGGGC
AGCGAGGCCTGGGCCGCCAGGCCGGCTCTGCAGGCGGCCGTCGACCTGGAAGCGCCGGCCGCCCTGGCCGAG
GACGCCAGCCTCGACCAGCTCAACGCGCAACTCGACCTGATCCGCCAGCGCGTCACCGCCGACGCCAGCGAC
GACCTCCTCGCCGAGTTGCGCCAGAGCGCGCTGCAAGTCCAGCGCCAGGCCGACGCCCTGCTCGCGCTGCGG
GTGGCCGACATCGAGCGGCTCGACGATCAGTTGAAAGTGATCGGCCCGCCGCAGCCCGACGAGGCGGAAAGC
CTCGCCGCCCAGCGCCAGGCCCTGACCCGGCAGAAGAACGCCCTGCTCGATGACGAACGCCAGGCCACCCAG
CTCGGCCAGTCGTCCCGCGACCTGGCGGCACAGATCGTCAACCTGCGCCGCAGCCTGTTCAACTCGCAGATC
AGCAGCCGCGCGGCGACACCGTTCAGCCCGAGCTTCTGGTCGACCCTGATCCGTCCCACCGACGACGACCTG
CGCCGTCTGGACAAGCTGAAGGCGGAGGCCCTGGTCGCCTTCGACAGCGCCATCGCGCCCGGACACCGCTGG
GCCTTCGCCGGAACCCTGCTGGCCACCGTGCTGGTCTGGAGCTTCGGCCGCCGCCTGCTGGAGCGCATGCTT
ACCTGGGCGATGATCCGCTGGCTGCCGGAAGGCCGCCTGCGGCGCAGCGCCCTGGCCCTGGCGGTCGGGCTG
GCGACCATCCTGACCATCGTCGGCGCGGTGTCGCTGATGCGCTGGGGCCTGGAAAGCAACGCCAGCCTGAGC
CCCGACATGGCCAGCCTGACCGATCAACTGGTGAGCCTGGCGACCTTCTGCGCCTTCATCGCCGGCCTCGGC
CGCGCCCTGCTGATGCTGCCGCGACCATCCTGGCGGCTGCCGGCGATCCCGGACAGGATCGCCAGCGCCCTC
GGCCCGTTCCCGGCGATCCTCGCAGTGGCGCTGATGCTGGTGGCCACCGAGGAACGGATCAACAGCGTCACC
GGCACCAGCCTGGCCCTGACCGTCGCCCTCAACGGCCTGACCGCGCTGGTCACCGCGCTGATCTTCGCCGCC
GCCCTGCTGCGCTACCACCATGTGCGGCGCAAGCACGACCTGGAGCGGCCAGGCGGGATCGCCGGGCTGATC
CCCTTCGTCGCCTCGGTATGGATCGCGGCGATCCTCCTCGCCCTGTTCACCGGCTACCTGTCGCTGGCCTAC
TTCCTCACCGGCAAGCTGCTGTGGATCAGCGTGATCGCGGCCACCACCTACCTGCTGATCGCTTTCTTCGGC
GACATCTGCGAAACCCTGCTCTCGCCCAAGCACCCCAGCGGCCTGGCGCTGGCCAATGCGCTCGGCCTGTCG
CCGCGCCACCAGGCCCAGGCCAGCACGGTGCTGGCCGGGGTCGGCCGCACCCTGCTGCTGCTCACCGCGCTG
CTGCTGGCCTTCCTTCCGGTCGGCTCGAGCCCCAGCGAACTGCTGCAGGGCTTCGCCCAACTGGGCGAAAGC
AGCAAGACCCTGGGCAACCTGAACATCGTCCCGCAGGACATCCTGGTCGCCCTGCTGCTGTTCGTCGGCGGC
CTGTTCGCCCTGCGCATCGTCAAGCGCTGGCTGAGCGAGCGGTTGCTGCCGGAAACCAACATGGACGCCGGC
ATGCGCGCCTCGCTGGTGACCCTGGTCGGCTACCTCGGCTTCGTGCTCCTGGCGATGCTGGTGATGTCCACC
CTGCGCATCAACCTGACCAGCCTGACCTGGGTGGTCAGCGCCCTCTCGGTAGGCATCGGCTTCGGCCTGCAG
GCCATCGTGCAGAACTTCATTTCCGGCCTGATCCTGCTGACCGAGCGGCCAGTGAAGGTCGGCGACTGGGTC
AGCCTGGGCGGGGTCGAGGGCGATATCCGGCGGATCAACGTGCGCGCCACCGAGATCCAGATGGGCGACCGC
TCCACGGTGATCGTGCCGAACTCGCAGTTCATCTCCCAGACCGTGCGCAACGTGACCATGGGCAATGCCCTC
GGGGTGGTCGGGGTGAACCTGACCCTGCCGCTGGACACCGACGCGATGAAGGTCCGCGAACTGCTCTTGCAG
GCCTTCGCCGAACACCCGGCGATCCTCGACGCACCGGCGCCCTCGGTGACGTTCAAGGATCTCGCCAGCAAC
GGCCTGGTGCTCAACGCCAGCGGCTTCGTCAACAGCCCGCGTTCGGTGGCCGGCGCGCGCAGCGACCTGCTC
TTCACCATCCTCGACCGCTTGCGCAGCGAAGGCATCGCGCTGTCCTCGCCACAGAGCCTGCTGATGATCCAG
GATGGCGGCCCGGCCAGCGCCGCGCCTGCGCCCGCGACGCCCGATTGA