ViewGene
Locus Name:
GeneID:
Location:

GeneID:2128
TrivialName: PA14_15290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15290
PAO1 Ortholog Locus:PA3771
Sequence Length:978
Protein Length:325
Start: 1297429
Stop: 1296452
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07158.1|AE004796_3 (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 324/325 (99%), Positives = 325/325 (100%)
Sequence:
ATGAAAGGGAGCACTGACCCGCATTCGTCATCCGCAGCCTTGCTCGCGGCGTTCGGCGCCGCCGTGCTGGAC
ATCAACCGGCTGGCGCGCGACAAGACCCTGGAGCGTTTCCATCGCACCGCGCTGGAACGTCTGCAGCAACTG
GTGCCGTTCCAGCGTGCCTGGTGGGGCCGCGCGGCGCTGATCGACGGCGTGCCGGTGGAGCACAGCGCACAC
CTGTTCAACCTCGAAGAGCACTATGTCGAGGACTGGAAATCGATCAGCCACGACGACATCACCGTCGGCCTG
GTACACGCCCGCCCGGGCACCGCCGTGGCCGTCGACATGCAGGCCACCGCCGGGCTGCGCTGGCTTGGCGCA
CGTCACGACATCGGTGAGCTGCTCTGCGTGATCCACGTCGATCCGATCACCCGCCTCAGCGACCATATCGCC
CTCTATCGCACGCCTGGCGGCCCGCCCTTCGCGGACCAGGAGAAGCTGCTCCTCGGGCAACTCTCGGCGCAC
CTGGCCGCGGCCGTCTCGGCCAACCAGATCCGTACCCTGGTGGCCCTGCGCGAATCCCTCGAACGCCAGGCT
CTGGCCATGGCGGTATGCGACCGCTACGGCGTGCTGCATTGTGCCGAACGCGGCTTCGTCGACCTGCTGCTC
GGCGCCTGGCCGGGCTGGACCGGTCCGCAGTTGCCGGAGGAAACCAGCCCGCAGGGCTATCGCGATGCGCGC
CTGGTGATCGACTCGCGGCAGGTCGGCGACCTCTACCTGCTCACCGCGCGACAACCGAGCGCGATCGAACAG
TTGAGCAATCGCGAAGGCGACGTCGCCCTGCTGTTCAGCGAAGGCAAGACCTACAAGCAGATCGCCCGCGAC
CTCGGCCTGGCGCCGAACACCGTGCGCCATCACATACGCACCATCTATTCCAAGCTCGGCGTCAACGACAAG
GCGAGCATCGCCCACCTGCTGCACCAGTTCCCGCCTGGCTGA
Translation:
MKGSTDPHSSSAALLAAFGAAVLDINRLARDKTLERFHRTALERLQQLVPFQRAWWGRAALIDGVPVEHSAH
LFNLEEHYVEDWKSISHDDITVGLVHARPGTAVAVDMQATAGLRWLGARHDIGELLCVIHVDPITRLSDHIA
LYRTPGGPPFADQEKLLLGQLSAHLAAAVSANQIRTLVALRESLERQALAMAVCDRYGVLHCAERGFVDLLL
GAWPGWTGPQLPEETSPQGYRDARLVIDSRQVGDLYLLTARQPSAIEQLSNREGDVALLFSEGKTYKQIARD
LGLAPNTVRHHIRTIYSKLGVNDKASIAHLLHQFPPG*
AnnotationID:2136GeneID:2128
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 13:01:01
Gene Name:
Confidence Code:3
GeneProduct:putative regulatory protein
Cell Localization:()
Synonyms:PA3771
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421,pfam00196,COG2771
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB53083.1| (AP003010) two-component response regulator [Mesorhizobium loti]
          Length = 162

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 28/57 (49%), Positives = 40/57 (70%)

>emb|CAB62668.1| (AL939107) putative transcriptional regulatory protein
           [Streptomyces coelicolor A3(2)]
          Length = 888

 Score = 51.6 bits (122), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 41/64 (64%)







 
Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues,  98.3% aligned
Score = 60.5 bits (147), Expect = 6e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
CD-Length = 58 residues, 100.0% aligned
Score = 58.7 bits (142), Expect = 2e-09
Identities = 21/58 (36%), Positives = 33/58 (56%)

COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]
CD-Length = 65 residues,  90.8% aligned
Score = 57.7 bits (139), Expect = 3e-09
Identities = 23/59 (38%), Positives = 38/59 (64%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4259




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21405




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31784




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2128_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2128
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3638
                           PA3771_tr
                           translation of PA3771
                           325
                           99.69
                           99.99
                           0
                           1687.0
     

     
     
112021
                           gb|AAG07158.1|AE004796_3
                           (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           325
                           99.69
                           99.99
                           0
                           1687.0
     

     






      

          
GC ORFID: 45130How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3771Glimmer Score: 

          
Start: 3656508Stop: 3657485

          
Length: 978


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3771 translation of PA3771Homolog Bit Score 654.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5641 (ORF: BLASTX 228.0), t_PA3771 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGGGAGCACTGACCCGCATTCGTCATCCGCAGCCTTGCTCGCGGCGTTCGGCGCCGCCGTGCTGGAC 
ATCAACCGGCTGGCGCGCGACAAGACCCTGGAGCGTTTCCATCGCACCGCGCTGGAACGTCTGCAGCAACTG 
GTGCCGTTCCAGCGTGCCTGGTGGGGCCGCGCGGCGCTGATCGACGGCGTGCCGGTGGAGCACAGCGCACAC 
CTGTTCAACCTCGAAGAGCACTATGTCGAGGACTGGAAATCGATCAGCCACGACGACATCACCGTCGGCCTG 
GTACACGCCCGCCCGGGCACCGCCGTGGCCGTCGACATGCAGGCCACCGCCGGGCTGCGCTGGCTTGGCGCA 
CGTCACGACATCGGTGAGCTGCTCTGCGTGATCCACGTCGATCCGATCACCCGCCTCAGCGACCATATCGCC 
CTCTATCGCACGCCTGGCGGCCCGCCCTTCGCGGACCAGGAGAAGCTGCTCCTCGGGCAACTCTCGGCGCAC 
CTGGCCGCGGCCGTCTCGGCCAACCAGATCCGTACCCTGGTGGCCCTGCGCGAATCCCTCGAACGCCAGGCT 
CTGGCCATGGCGGTATGCGACCGCTACGGCGTGCTGCATTGTGCCGAACGCGGCTTCGTCGACCTGCTGCTC 
GGCGCCTGGCCGGGCTGGACCGGTCCGCAGTTGCCGGAGGAAACCAGCCCGCAGGGCTATCGCGATGCGCGC 
CTGGTGATCGACTCGCGGCAGGTCGGCGACCTCTACCTGCTCACCGCGCGACAACCGAGCGCGATCGAACAG 
TTGAGCAATCGCGAAGGCGACGTCGCCCTGCTGTTCAGCGAAGGCAAGACCTACAAGCAGATCGCCCGCGAC 
CTCGGCCTGGCGCCGAACACCGTGCGCCATCACATACGCACCATCTATTCCAAGCTCGGCGTCAACGACAAG 
GCGAGCATCGCCCACCTGCTGCACCAGTTCCCGCCTGGCTGA