ViewGene
Locus Name:
GeneID:
Location:

GeneID:2125
TrivialName: PA14_00990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00990
PAO1 Ortholog Locus:PA0082
Sequence Length:1035
Protein Length:344
Start: 97777
Stop: 98811
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03472.1|AE004447_5 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 338/344 (98%), Positives = 339/344 (98%)
Sequence:
GTGCTGGATGTACCCGTTTTGCTGGCCGCCGTATCCCCGGACTCGCCCTGTGGCGACGATCTGGAGTACGAC
GCCGCGTTCCTCGAACTCGAACGCATCGCCCAGGGCCAACCCGAGCGCCAGATGGGCGATGCCGTGCTGCCC
GCCGAACCGCCGGAGTGGCCGCGCGTACGCGCGCTGGCCAGCGAGCTGTTCGGCCGTAGCAAGGACCTGCGG
GTAGCCAACCTGCTGCTGCAGAGCAACGTCGCCCTCGACGGCCTGGACGGGCTCGCCGAAGGCCTGCTGCTG
GTCCGCGAGCTGCTCGGCCAGTACTGGGACGGCGTCTATCCGTTGCTCGACGCCGATGACGACAACGACCCC
ACCTTCCGTATCAACGCCCTCACCGGCCTGGTCGCCGAACCGCTGCTGCAACTGGTCTGGGCGATCCCGCTG
GTGCGCTCGCGGGCGTTCGGCCCGGTCAACCTGCGCGCCGCGCTGAACGCCGCCGGGCTGCAACGCTTCGCC
AGCGAGACCCTGAGTCCCGAGCAGATCGCCGGCGCCTTCGCCGATGCCGACGCCGATGCGCTGGCCGCCACC
CGGCGCGCCCTGGATGGCGCCCAGGAACATGCCCTGGCCATCGAGAGCGGCGTCGCCGAACGGGTCGGCTCG
GCCCAGGGCCTCGACCTCGGTCCCCTTCGTCAACTGCTGCGCCAGGCCCTCCAGGTGTTCGACCTGTACGGC
CCGCAGGGCGCCGGTGAGCCCTTGGCGCCGGGCGCCGAAGCGGCCACCGGCGAGCAGGGGGGCGCCGCGCCT
GTCGCAGCCGTCGCCGCGCCGGCACCGCGTGCCAGCGGCGAGATCGCCAACCGCGAAGACGTCCTGCGCCAG
CTCGACCGCCTGCTCGAGTATTACGTTCGCCACGAGCCGTCGAGCCCGGTGCCGGTGCTGCTCAAGCGCGCC
AAGACACTGGTGACGGCCGACTTCGCCGAAATCGTGAGGAATCTCATCCCCGATGGGATTTCCCAGTTCGAA
ACCCTGCGAGGCCCGGAAAGCGAGTAA
Translation:
MLDVPVLLAAVSPDSPCGDDLEYDAAFLELERIAQGQPERQMGDAVLPAEPPEWPRVRALASELFGRSKDLR
VANLLLQSNVALDGLDGLAEGLLLVRELLGQYWDGVYPLLDADDDNDPTFRINALTGLVAEPLLQLVWAIPL
VRSRAFGPVNLRAALNAAGLQRFASETLSPEQIAGAFADADADALAATRRALDGAQEHALAIESGVAERVGS
AQGLDLGPLRQLLRQALQVFDLYGPQGAGEPLAPGAEAATGEQGGAAPVAAVAAPAPRASGEIANREDVLRQ
LDRLLEYYVRHEPSSPVPVLLKRAKTLVTADFAEIVRNLIPDGISQFETLRGPESE*
AnnotationID:2133GeneID:2125
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0082
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14507




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33433




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2125_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2125
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3635
                           PA0082_tr
                           translation of PA0082
                           344
                           98.25
                           98.54
                           0
                           1690.0
     

     
     
112010
                           gb|AAG03472.1|AE004447_5
                           (AE004447) hypothetical protein PA0082 [Pseudomonas aeruginosa PAO1]
                           344
                           97.96
                           98.54
                           0
                           1687.0
     

     
     
112011
                           gb|AAM38947.1|
                           (AE012060) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           356
                           41.01
                           56.17
                           21
                           565.0
     

     






      

          
GC ORFID: 45127How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0082Glimmer Score: 

          
Start: 5899116Stop: 5900150

          
Length: 1035


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0082 translation of PA0082Homolog Bit Score 655.0

          
Other Homologs:  t_PA0082 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTGGATGTACCCGTTTTGCTGGCCGCCGTATCCCCGGACTCGCCCTGTGGCGACGATCTGGAGTACGAC 
GCCGCGTTCCTCGAACTCGAACGCATCGCCCAGGGCCAACCCGAGCGCCAGATGGGCGATGCCGTGCTGCCC 
GCCGAACCGCCGGAGTGGCCGCGCGTACGCGCGCTGGCCAGCGAGCTGTTCGGCCGTAGCAAGGACCTGCGG 
GTAGCCAACCTGCTGCTGCAGAGCAACGTCGCCCTCGACGGCCTGGACGGGCTCGCCGAAGGCCTGCTGCTG 
GTCCGCGAGCTGCTCGGCCAGTACTGGGACGGCGTCTATCCGTTGCTCGACGCCGATGACGACAACGACCCC 
ACCTTCCGTATCAACGCCCTCACCGGCCTGGTCGCCGAACCGCTGCTGCAACTGGTCTGGGCGATCCCGCTG 
GTGCGCTCGCGGGCGTTCGGCCCGGTCAACCTGCGCGCCGCGCTGAACGCCGCCGGGCTGCAACGCTTCGCC 
AGCGAGACCCTGAGTCCCGAGCAGATCGCCGGCGCCTTCGCCGATGCCGACGCCGATGCGCTGGCCGCCACC 
CGGCGCGCCCTGGATGGCGCCCAGGAACATGCCCTGGCCATCGAGAGCGGCGTCGCCGAACGGGTCGGCTCG 
GCCCAGGGCCTCGACCTCGGTCCCCTTCGTCAACTGCTGCGCCAGGCCCTCCAGGTGTTCGACCTGTACGGC 
CCGCAGGGCGCCGGTGAGCCCTTGGCGCCGGGCGCCGAAGCGGCCACCGGCGAGCAGGGGGGCGCCGCGCCT 
GTCGCAGCCGTCGCCGCGCCGGCACCGCGTGCCAGCGGCGAGATCGCCAACCGCGAAGACGTCCTGCGCCAG 
CTCGACCGCCTGCTCGAGTATTACGTTCGCCACGAGCCGTCGAGCCCGGTGCCGGTGCTGCTCAAGCGCGCC 
AAGACACTGGTGACGGCCGACTTCGCCGAAATCGTGAGGAATCTCATCCCCGATGGGATTTCCCAGTTCGAA 
ACCCTGCGAGGCCCGGAAAGCGAGTAA