ViewGene
Locus Name:
GeneID:
Location:

GeneID:2123
TrivialName: PA14_63580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63580
PAO1 Ortholog Locus:PA4811
Sequence Length:930
Protein Length:309
Start: 5669259
Stop: 5668330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08197.1|AE004894_3 (AE004894) nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 308/309 (99%), Positives = 309/309 (100%)
Sequence:
ATGAGTAGTCAGGACATCCACGCCCGCTCCGCGACCACCACGCCGATGCCCTCGGTGCGGAACCAGGAGGAA
GTGGCGAAACTGATCGACGTGTCCAAGTGCATCGGTTGCAAGGCCTGCCAGGTCGCCTGCTCGGAATGGAAC
GAGCTGCGCGACGAGGTCGGCCACAACCACGGCACCTACGACAACCCCATGGACCTGACGGCCGACTCGTGG
ACGGTGATGCGTTTCACCGAGTACGAGAACGAGGCCGGCAACCTCGAGTGGCTGATCCGCAAGGACGGCTGC
ATGCACTGCGCTGAGCCAGGCTGCCTGAAGGCCTGCCCGAGCCCGGGGGCGATCGTGAAGTACGCCAACGGC
ATCGTCGACTTCAACCAGGACAAGTGCATCGGTTGCGGCTACTGCATCACCGGTTGCCCGTTCGACATCCCA
CGGATCTCGCAGAAGGACCACAAGGCCTACAAGTGCAGCCTGTGTTCCGACCGCGTCTCGGTGGGCATGGAG
CCGGCCTGCGTGAAGACCTGCCCGACCGGCGCCATCGTCTTCGGCAGCAAGGAGGACATGAAGGAACACGCC
GCCGAACGCATCGTCGACCTGAAGAGCCGCGGTTACGAGAACGCCGGCCTGTACGACCCCGAAGGGGTGGGC
GGCACCCACGTGATGTACGTGCTGCACCACGCCGACAAGCCGTCGCTCTATGCCGGCCTGGCCGACCAGCCG
AGCGTCAGCCCGCTGGTCAGCCTGTGGAAGGGCGTGACCAAGCCGCTGGCGCTGCTGGCCATGGGCGCCACG
GTGCTCGCCGGGTTCTTCCACTATGTGCGCGTCGGTCCCAACCGCGCGGACGACGAGGAAGACCACGGGCAA
GCCGAGGCACCGGTGCACCAGGTCGATCCGTCGGTACACACCTTTGACCCGCACGAGCGTCGTTGA
Translation:
MSSQDIHARSATTTPMPSVRNQEEVAKLIDVSKCIGCKACQVACSEWNELRDEVGHNHGTYDNPMDLTADSW
TVMRFTEYENEAGNLEWLIRKDGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFDIP
RISQKDHKAYKCSLCSDRVSVGMEPACVKTCPTGAIVFGSKEDMKEHAAERIVDLKSRGYENAGLYDPEGVG
GTHVMYVLHHADKPSLYAGLADQPSVSPLVSLWKGVTKPLALLAMGATVLAGFFHYVRVGPNRADDEEDHGQ
AEAPVHQVDPSVHTFDPHERR*
AnnotationID:2131GeneID:2123
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:15
Gene Name:fdnH
Confidence Code:2
GeneProduct:nitrate-inducible formate dehydrogenase, beta subunit
Cell Localization:()
Synonyms:fdoH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:formate dehydrogenase
Functional Category Confidence Code:5
COGs:COG0437
Secondary Functional Category(ies):
EC Number:1.2.1.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66119.1|AE016240_4 (AE016775) formate dehydrogenase, iron-sulfur subunit [Pseudomonas
           putida KT2440]
          Length = 316

 Score =  553 bits (1426), Expect = e-157
 Identities = 253/307 (82%), Positives = 278/307 (90%)

>gb|AAM87621.1|AE014009_3 (AE014009) formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           pestis KIM]
          Length = 323

 Score =  441 bits (1135), Expect = e-123
 Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 4/296 (1%)

>gb|AAL22875.1| (AE008888) formate dehydrogenase-O, Fe-S subunit [Salmonella
           typhimurium LT2]
          Length = 300

 Score =  436 bits (1120), Expect = e-121
 Identities = 202/287 (70%), Positives = 234/287 (81%), Gaps = 4/287 (1%)






 
Structural Features:
COG0437, HybA, Fe-S-cluster-containing hydrogenase components 1 
[Energy production and conversion]
CD-Length = 203 residues,  97.0% aligned
Score =  219 bits (559), Expect = 4e-58
Identities = 86/215 (40%), Positives = 111/215 (51%), Gaps = 18/215 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4249




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21395




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35239




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2123_cdd.html


    		




 
URL:

















    ReferenceID:35989




  
Author/Investigator(s):
        Plunkett G 3rd, Burland V, Daniels DL, Blattner FR.





  
Title:
        Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.




  
PubMed:
        8346018


MedLine:
        




    
Source:
Nucleic Acids Res. 1993 Jul 25;21(15):3391-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8346018

















    ReferenceID:35992




  
Author/Investigator(s):
        Berg BL, Li J, Heider J, Stewart V.





  
Title:
        Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. I. Nucleotide sequence of the fdnGHI operon and evidence that opal (UGA) encodes selenocysteine.




  
PubMed:
        1834669


MedLine:
        




    
Source:
J Biol Chem. 1991 Nov 25;266(33):22380-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1834669









           
Homologs By Global Alignment 

           

       



     
Gene ID:2123
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3633
                           PA4811_tr
                           translation of PA4811
                           309
                           99.67
                           99.99
                           0
                           1691.0
     

     
     
111928
                           gb|AAG08197.1|AE004894_3
                           (AE004894) nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas aeruginosa PAO1]
                           309
                           99.67
                           99.99
                           0
                           1691.0
     

     
     
111929
                           gb|AAN66119.1|AE016240_4
                           (AE016775) formate dehydrogenase, iron-sulfur subunit [Pseudomonas putida KT2440]
                           316
                           80.69
                           88.60
                           7
                           1422.0
     

     
     
111930
                           gb|AAQ61502.1|
                           (AE016923) formate dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           311
                           68.16
                           78.77
                           18
                           1186.0
     

     
     
111933
                           emb|CAE17260.1|
                           (BX571875) formate dehydrogenase-O, iron-sulfur subunit (formate dehydrogenase-O beta subunit) (FDH-Z beta subunit) (aerobic formate dehydrogenase iron-sulfur subunit) [Photorhabdus luminescens subsp. laumondii TTO1]
                           314
                           65.28
                           78.34
                           10
                           1132.0
     

     






      

          
GC ORFID: 45125How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4811Glimmer Score: 

          
Start: 4932939Stop: 4932010

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4811 translation of PA4811Homolog Bit Score 655.0

          
Other Homologs:  t_PA4811 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAGTCAGGACATCCACGCCCGCTCCGCGACCACCACGCCGATGCCCTCGGTGCGGAACCAGGAGGAA 
GTGGCGAAACTGATCGACGTGTCCAAGTGCATCGGTTGCAAGGCCTGCCAGGTCGCCTGCTCGGAATGGAAC 
GAGCTGCGCGACGAGGTCGGCCACAACCACGGCACCTACGACAACCCCATGGACCTGACGGCCGACTCGTGG 
ACGGTGATGCGTTTCACCGAGTACGAGAACGAGGCCGGCAACCTCGAGTGGCTGATCCGCAAGGACGGCTGC 
ATGCACTGCGCTGAGCCAGGCTGCCTGAAGGCCTGCCCGAGCCCGGGGGCGATCGTGAAGTACGCCAACGGC 
ATCGTCGACTTCAACCAGGACAAGTGCATCGGTTGCGGCTACTGCATCACCGGTTGCCCGTTCGACATCCCA 
CGGATCTCGCAGAAGGACCACAAGGCCTACAAGTGCAGCCTGTGTTCCGACCGCGTCTCGGTGGGCATGGAG 
CCGGCCTGCGTGAAGACCTGCCCGACCGGCGCCATCGTCTTCGGCAGCAAGGAGGACATGAAGGAACACGCC 
GCCGAACGCATCGTCGACCTGAAGAGCCGCGGTTACGAGAACGCCGGCCTGTACGACCCCGAAGGGGTGGGC 
GGCACCCACGTGATGTACGTGCTGCACCACGCCGACAAGCCGTCGCTCTATGCCGGCCTGGCCGACCAGCCG 
AGCGTCAGCCCGCTGGTCAGCCTGTGGAAGGGCGTGACCAAGCCGCTGGCGCTGCTGGCCATGGGCGCCACG 
GTGCTCGCCGGGTTCTTCCACTATGTGCGCGTCGGTCCCAACCGCGCGGACGACGAGGAAGACCACGGGCAA 
GCCGAGGCACCGGTGCACCAGGTCGATCCGTCGGTACACACCTTTGACCCGCACGAGCGTCGTTGA