ViewGene
Locus Name:
GeneID:
Location:

GeneID:2121
TrivialName: PA14_24530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24530
PAO1 Ortholog Locus:PA3060
Sequence Length:990
Protein Length:329
Start: 2143782
Stop: 2144771
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06448.1|AE004730_12 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/329 (99%), Positives = 327/329 (99%)
Sequence:
ATGATCAGCAAGTGGCTGTTTAGCGGCGCCTTCCTGTTCGAGCTGAGCAGTTGGGCGAGCGTCTTCGCCGAC
CTGCCGTTCGGTCAGGCGCTGGCGCTCTACCTGTTCGCCCACGGCCTGGGCAGCGCGCTGCTGTGCGTCGGC
GTATGGCTGCTGCTGCCGCGGCGCTACAAGTTCCCGCTGCCGTGGAGCCCGCTGTTCCTCTTCAGCCTGGCC
TTCTTCGTGCCGCTGATCGGGGCGGTCGGCGTCGCTGCGGCGGTATTCCCGGCGCTGTACCTGCCGCGCCAG
CGTGGCGAGCAGGCCTGGCAGGCGATGGGCGTCCCCGAGCTGCCGTTCCGGCCGAAGGAAAAGCGCCTCGAC
ATGATGTTCAGCGACGGCGGTCTGCAGGACGTCCTGCGCCATGCGCCGGACCCGAACCAGCGGCTCACGGCG
ATCTTCGCCACCCGGCGGATGCCCGGCAAGGAGGCGATCCCGATCCTCAAGCTGGCCCTGCGCGACCCCGCC
GACGACGTCCGCCTGCTGGCCTACTCGATGCTCGACCAGAAGGAAAGCCGGATCAACCAGCGCATCGAGGCC
GCCCTCGGCCGCCTCGCCGGCGCCACGCCGGCGCGACGCGGCGCGCTGCACGGGACCCTGGCGCGCTGGTAC
TGGGAACTGGCCTACCTGGGGTTGGCCCAGGGCAGCGTACTGGAGCACATCCTCGAGCAGGCGCGCGAGCAT
ACCGACCAGGCGCTGCGCGGCACACCCTCGGCCGACCTGCATCTGCTGGCCGGACGCATCGCCCTCGAACAA
GGCCGCCTGGAGGATGCCGGGCACGCCCTCCAGGCCGCCGAGGAGGCGGGAATCGATAGCGCCCAGCTGGCG
CCGTTCCGCGCCGAGGTGGCGTTCTTCCAGCGGCGCTACCGGGACATCCCCCGGCTTCTCGCCGGAATGCCC
GACGACATGCTGCAACGGCCGCCCTTCGCGGCCCTGGCGAGATACTGGACATGA
Translation:
MISKWLFSGAFLFELSSWASVFADLPFGQALALYLFAHGLGSALLCVGVWLLLPRRYKFPLPWSPLFLFSLA
FFVPLIGAVGVAAAVFPALYLPRQRGEQAWQAMGVPELPFRPKEKRLDMMFSDGGLQDVLRHAPDPNQRLTA
IFATRRMPGKEAIPILKLALRDPADDVRLLAYSMLDQKESRINQRIEAALGRLAGATPARRGALHGTLARWY
WELAYLGLAQGSVLEHILEQAREHTDQALRGTPSADLHLLAGRIALEQGRLEDAGHALQAAEEAGIDSAQLA
PFRAEVAFFQRRYRDIPRLLAGMPDDMLQRPPFAALARYWT*
AnnotationID:2129GeneID:2121
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 12:12:32
Gene Name:pelE
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3060
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:
Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870






   
Comment:


















    ReferenceID:4245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21391




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2121
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3630
                           PA3060_tr
                           translation of PA3060
                           329
                           99.39
                           99.39
                           0
                           1689.0
     

     
     
111891
                           gb|AAG06448.1|AE004730_12
                           (AE004730) hypothetical protein PA3060 [Pseudomonas aeruginosa PAO1]
                           329
                           99.39
                           99.39
                           0
                           1689.0
     

     






      

          
GC ORFID: 45123How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3060Glimmer Score: 

          
Start: 2810147Stop: 2809158

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3060 translation of PA3060Homolog Bit Score 655.0

          
Other Homologs:  t_PA3060 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGCAAGTGGCTGTTTAGCGGCGCCTTCCTGTTCGAGCTGAGCAGTTGGGCGAGCGTCTTCGCCGAC 
CTGCCGTTCGGTCAGGCGCTGGCGCTCTACCTGTTCGCCCACGGCCTGGGCAGCGCGCTGCTGTGCGTCGGC 
GTATGGCTGCTGCTGCCGCGGCGCTACAAGTTCCCGCTGCCGTGGAGCCCGCTGTTCCTCTTCAGCCTGGCC 
TTCTTCGTGCCGCTGATCGGGGCGGTCGGCGTCGCTGCGGCGGTATTCCCGGCGCTGTACCTGCCGCGCCAG 
CGTGGCGAGCAGGCCTGGCAGGCGATGGGCGTCCCCGAGCTGCCGTTCCGGCCGAAGGAAAAGCGCCTCGAC 
ATGATGTTCAGCGACGGCGGTCTGCAGGACGTCCTGCGCCATGCGCCGGACCCGAACCAGCGGCTCACGGCG 
ATCTTCGCCACCCGGCGGATGCCCGGCAAGGAGGCGATCCCGATCCTCAAGCTGGCCCTGCGCGACCCCGCC 
GACGACGTCCGCCTGCTGGCCTACTCGATGCTCGACCAGAAGGAAAGCCGGATCAACCAGCGCATCGAGGCC 
GCCCTCGGCCGCCTCGCCGGCGCCACGCCGGCGCGACGCGGCGCGCTGCACGGGACCCTGGCGCGCTGGTAC 
TGGGAACTGGCCTACCTGGGGTTGGCCCAGGGCAGCGTACTGGAGCACATCCTCGAGCAGGCGCGCGAGCAT 
ACCGACCAGGCGCTGCGCGGCACACCCTCGGCCGACCTGCATCTGCTGGCCGGACGCATCGCCCTCGAACAA 
GGCCGCCTGGAGGATGCCGGGCACGCCCTCCAGGCCGCCGAGGAGGCGGGAATCGATAGCGCCCAGCTGGCG 
CCGTTCCGCGCCGAGGTGGCGTTCTTCCAGCGGCGCTACCGGGACATCCCCCGGCTTCTCGCCGGAATGCCC 
GACGACATGCTGCAACGGCCGCCCTTCGCGGCCCTGGCGAGATACTGGACATGA