ViewGene
Locus Name:
GeneID:
Location:

GeneID:212
TrivialName: PA14_03720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03720
PAO1 Ortholog Locus:PA0285
Sequence Length:2283
Protein Length:760
Start: 334749
Stop: 332467
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03674.1|AE004466_8 (AE004466) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 760/760 (100%), Positives = 760/760 (100%)
Sequence:
ATGAGCCCCCGCCTGAGTGCCCTTCGCCTGAGCCTGGCTTATCTCGCAATCGCCATCGCCTGGGCGTTCCTG
AGCGATCATTTGTTACAAAACCAGGTCCAGGACCACGACCAGCTGGTGTTCTGGATGACCGCCAAGCGGCTG
TTCTTCTTCGCCGCAACCGGCCTGCTCCTGTACCTCTACCTGGTACGCCAATTCCGCCGCAAGGCCCAGGCC
TACGACGAACTGCACGGCAGCGAGCAGCGCCTGAACCGTGCCCTGGAAGCGGTGCGCGACGGTCTCTGGGAT
TGGGACCTGGTGACCGACCGGATGTTCGTCTCGCCGGGCTACGCCGCGCTGATCGGCCTCGCTCCGGAGGAA
CTCGGCGACCCCATCGAGACCTGGAAGAAGCGCCTGCACCCGGAAGAGTACGCCACCGTGCTGGAGGCCCAC
CGCAACCACCTGCAGGGCCTGACCGACAATCTCGACCACATCTACCGCCTGCGCCACAAGGACGGCGACTAC
CGCTGGATCCACTCGCGCGGCCGGGTCCTCCGCGATGCCCTGGGCAAGCCGCTGCACTACACCGGCGTGGCC
CGCGACATCACCCTGCAGCGGCTCAAGGAAGACCACCTGCGCCAGGCCGCGGCGGTATTCGACAGCACCCGC
GAGGGCGTTCTGGTCACCGATGCCCAGGCGGTGATCGTGCACGTCAACCCTTCCTTCGAGCGCATCACCGGC
TACCGTTCCGAGGACGTGCTCGGCAAGACCCCGGCGATCCTCCGCTCCGGTCGCCAGGACCAGGCGTTCTAC
CAGCGCCTGTGGCTGGCCCTGCGCGAGCAGGACGTCTGGAGCGGAGAGATCTGGAACCGTCGCAAGAGCGGC
GAGATCTACCCGCAGTGGCTGCACATCCGCGCGGTGCGCAACGACCAGGGCCAACTGACCCACTACGTCGGG
GTGTTCTCCGACCTGAGCAGCATCAAGCGCTCGGAGAACGAACTGGACTTCCTCGCCCACCACGACTCGCTG
ACCGGCCTGCCCAACCGCGTGCTGCTGCGCGAGCGCATCGAGCAGGCGCTGGAGAACGGCAAGGACCGGACG
GTGGCCGGGGCCCTGCTGCTGATCGACCTCGACCACTTCAAGCACATCAACGACAGCCTCGGCCACACCACC
GGCGACATGCTCCTCAAGGAAGTCAGCAAGCGCCTGCAACACCAGCTCGACGAGCGCTGCCTGCTGTCGCGA
CTGGGCGGCGACGAATTCGCCATCCTCGTCGAGAACGACGACCCGGAAGCCGTCGCGCGACTCTCACAGCGC
ATCCTCGACGGTTTCAACGCGCCGTTCGACATCCACTGCCAGCCGATCTATATCAGCGCCAGCCTCGGTGTC
AGCCTCTACCCGGAAGACGCCAGCGACGTCGACCACCTGATGCAACACGCCGACGCCGCGCTGTTCCAGGCC
AAGGACAGCGGGCGTAACGCCTACGCCTTCTACACCCGCGTGCTGACCGCCCGGGCCCGCGCCCATGTCCAG
GTGGAATCGGCCCTGCGCCATGCGCTGGAGCACGACGAACTGCGCGTCCACTACCAGCCGGTGCACGACCTG
GCCAGCGGGCGGATCGTCGGCGTCGAGTCGCTGGTGCGCTGGCAGCATCCCGAGCGCGGCCTGGTGCCGCCA
GGCGAGTTCGTCCCGGTGGCGGAGGAATGCGGGCTGATCGCCGCGCTGGACAATTGGGTGCTCAAGCGTGCC
TGCCGGCAGATGCGCGAATGGCAACAGCGCGGCGTCGAACTGGAGTTCGTCGCGGTCAACGTCTCCAGTCGG
CTGTTCAACCGCGGCGGCCTAGAGGAAAGGATCGCCAACGCCCTGGAAGAGTCCGGGCTGGAGCCCCGCTAC
CTGGAGCTGGAAGTCACCGAAAGCGCGGTGATGGAGGACTTCGAGCAGTCCCTCAACCTGCTCTGCCGCCTG
CGCATCCTCGGCGTGAACCTGGCCATCGACGACTTCGGCACCGGCTATTCCTCGCTGATGCGCCTCAAGCGG
CTGCCGGTACACAAGCTGAAGATCGACCAGGGCTTCGTCGCCGGCCTGCCCGGCGCGGTGGACGACGCCGCG
ATCGCCCGTGCGATAGTTGCCCTGGCGCAAAGCATGGGCCTGCGGGTGGTTGCCGAGGGTATCGAGCACCAG
GACCAGGCGCTGTTCCTGCGCGAACATGGCTGCGACTTCGGCCAAGGCTACTGGTACGGACGGCCGCAACCG
GCGGAAGCGCTGCGCTTCGACCTGCCGCCCGTGGCGTTGCCGGAAGACTGA
Translation:
MSPRLSALRLSLAYLAIAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAATGLLLYLYLVRQFRRKAQA
YDELHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPEEYATVLEAH
RNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDITLQRLKEDHLRQAAAVFDSTR
EGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRSGRQDQAFYQRLWLALREQDVWSGEIWNRRKSG
EIYPQWLHIRAVRNDQGQLTHYVGVFSDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRT
VAGALLLIDLDHFKHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQR
ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYTRVLTARARAHVQ
VESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPPGEFVPVAEECGLIAALDNWVLKRA
CRQMREWQQRGVELEFVAVNVSSRLFNRGGLEERIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRL
RILGVNLAIDDFGTGYSSLMRLKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQ
DQALFLREHGCDFGQGYWYGRPQPAEALRFDLPPVALPED*
AnnotationID:222GeneID:212
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box/GGDEF domain/EAL domain protein
Cell Localization:()
Synonyms:PA0285
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65850.1|AE016213_6 (AE016774) sensory box protein [Pseudomonas putida KT2440]
          Length = 631

 Score =  658 bits (1697), Expect = 0.0
 Identities = 335/550 (60%), Positives = 411/550 (74%), Gaps = 1/550 (0%)

>gb|AAO53851.1| (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 643

 Score =  640 bits (1651), Expect = 0.0
 Identities = 332/597 (55%), Positives = 418/597 (70%), Gaps = 1/597 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33636




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:212_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:212
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
363
                           PA0285_tr
                           translation of PA0285
                           760
                           99.99
                           99.99
                           0
                           3953.0
     

     
     
21988
                           gb|AAG03674.1|AE004466_8
                           (AE004466) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           760
                           99.99
                           99.99
                           0
                           3953.0
     

     
     
21989
                           gb|AAN65850.1|AE016213_6
                           (AE016774) sensory box protein [Pseudomonas putida KT2440]
                           763
                           46.92
                           59.23
                           135
                           1702.0
     

     
     
21990
                           gb|AAO53851.1|
                           (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           788
                           43.90
                           55.71
                           173
                           1650.0
     

     
     
21997
                           gb|AAO54078.1|
                           (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           858
                           37.29
                           53.37
                           127
                           1346.0
     

     






      

          
GC ORFID: 43214How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0285Glimmer Score: 

          
Start: 6136090Stop: 6133808

          
Length: 2283


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0285 translation of PA0285Homolog Bit Score 1527.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4046 (ORF: BLASTX 635.0), t_PA1727 (ORF: BLASTX 382.0), psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 364.0), t_PA4367 (ORF: BLASTX 338.0), t_PA5295 (ORF: BLASTX 305.0), psyr_15may02_Scaffold2_revised_gene4057 (ORF: BLASTX 301.0), t_PA0285 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCCCCGCCTGAGTGCCCTTCGCCTGAGCCTGGCTTATCTCGCAATCGCCATCGCCTGGGCGTTCCTG 
AGCGATCATTTGTTACAAAACCAGGTCCAGGACCACGACCAGCTGGTGTTCTGGATGACCGCCAAGCGGCTG 
TTCTTCTTCGCCGCAACCGGCCTGCTCCTGTACCTCTACCTGGTACGCCAATTCCGCCGCAAGGCCCAGGCC 
TACGACGAACTGCACGGCAGCGAGCAGCGCCTGAACCGTGCCCTGGAAGCGGTGCGCGACGGTCTCTGGGAT 
TGGGACCTGGTGACCGACCGGATGTTCGTCTCGCCGGGCTACGCCGCGCTGATCGGCCTCGCTCCGGAGGAA 
CTCGGCGACCCCATCGAGACCTGGAAGAAGCGCCTGCACCCGGAAGAGTACGCCACCGTGCTGGAGGCCCAC 
CGCAACCACCTGCAGGGCCTGACCGACAATCTCGACCACATCTACCGCCTGCGCCACAAGGACGGCGACTAC 
CGCTGGATCCACTCGCGCGGCCGGGTCCTCCGCGATGCCCTGGGCAAGCCGCTGCACTACACCGGCGTGGCC 
CGCGACATCACCCTGCAGCGGCTCAAGGAAGACCACCTGCGCCAGGCCGCGGCGGTATTCGACAGCACCCGC 
GAGGGCGTTCTGGTCACCGATGCCCAGGCGGTGATCGTGCACGTCAACCCTTCCTTCGAGCGCATCACCGGC 
TACCGTTCCGAGGACGTGCTCGGCAAGACCCCGGCGATCCTCCGCTCCGGTCGCCAGGACCAGGCGTTCTAC 
CAGCGCCTGTGGCTGGCCCTGCGCGAGCAGGACGTCTGGAGCGGAGAGATCTGGAACCGTCGCAAGAGCGGC 
GAGATCTACCCGCAGTGGCTGCACATCCGCGCGGTGCGCAACGACCAGGGCCAACTGACCCACTACGTCGGG 
GTGTTCTCCGACCTGAGCAGCATCAAGCGCTCGGAGAACGAACTGGACTTCCTCGCCCACCACGACTCGCTG 
ACCGGCCTGCCCAACCGCGTGCTGCTGCGCGAGCGCATCGAGCAGGCGCTGGAGAACGGCAAGGACCGGACG 
GTGGCCGGGGCCCTGCTGCTGATCGACCTCGACCACTTCAAGCACATCAACGACAGCCTCGGCCACACCACC 
GGCGACATGCTCCTCAAGGAAGTCAGCAAGCGCCTGCAACACCAGCTCGACGAGCGCTGCCTGCTGTCGCGA 
CTGGGCGGCGACGAATTCGCCATCCTCGTCGAGAACGACGACCCGGAAGCCGTCGCGCGACTCTCACAGCGC 
ATCCTCGACGGTTTCAACGCGCCGTTCGACATCCACTGCCAGCCGATCTATATCAGCGCCAGCCTCGGTGTC 
AGCCTCTACCCGGAAGACGCCAGCGACGTCGACCACCTGATGCAACACGCCGACGCCGCGCTGTTCCAGGCC 
AAGGACAGCGGGCGTAACGCCTACGCCTTCTACACCCGCGTGCTGACCGCCCGGGCCCGCGCCCATGTCCAG 
GTGGAATCGGCCCTGCGCCATGCGCTGGAGCACGACGAACTGCGCGTCCACTACCAGCCGGTGCACGACCTG 
GCCAGCGGGCGGATCGTCGGCGTCGAGTCGCTGGTGCGCTGGCAGCATCCCGAGCGCGGCCTGGTGCCGCCA 
GGCGAGTTCGTCCCGGTGGCGGAGGAATGCGGGCTGATCGCCGCGCTGGACAATTGGGTGCTCAAGCGTGCC 
TGCCGGCAGATGCGCGAATGGCAACAGCGCGGCGTCGAACTGGAGTTCGTCGCGGTCAACGTCTCCAGTCGG 
CTGTTCAACCGCGGCGGCCTAGAGGAAAGGATCGCCAACGCCCTGGAAGAGTCCGGGCTGGAGCCCCGCTAC 
CTGGAGCTGGAAGTCACCGAAAGCGCGGTGATGGAGGACTTCGAGCAGTCCCTCAACCTGCTCTGCCGCCTG 
CGCATCCTCGGCGTGAACCTGGCCATCGACGACTTCGGCACCGGCTATTCCTCGCTGATGCGCCTCAAGCGG 
CTGCCGGTACACAAGCTGAAGATCGACCAGGGCTTCGTCGCCGGCCTGCCCGGCGCGGTGGACGACGCCGCG 
ATCGCCCGTGCGATAGTTGCCCTGGCGCAAAGCATGGGCCTGCGGGTGGTTGCCGAGGGTATCGAGCACCAG 
GACCAGGCGCTGTTCCTGCGCGAACATGGCTGCGACTTCGGCCAAGGCTACTGGTACGGACGGCCGCAACCG 
GCGGAAGCGCTGCGCTTCGACCTGCCGCCCGTGGCGTTGCCGGAAGACTGA