ViewGene
Locus Name:
GeneID:
Location:

GeneID:2118
TrivialName: PA14_26360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26360
PAO1 Ortholog Locus:PA2914
Sequence Length:1032
Protein Length:343
Start: 2299563
Stop: 2298532
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06302.1|AE004717_8 (AE004717) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 340/343 (99%), Positives = 342/343 (99%)
Sequence:
ATGACCCTGTTCCGCAGCCCTCGCGCCTATTGCCTGTTGCTGGGCAGCCTGGTCCTGTTGCTCGGCCTGTCC
TGCGTGGTCGCCCTCGGCTTCGGTCCGGCGCGACTGGACAGCGGCCTGGTCGGCCGCATCGTCCTCCAGCGC
CTGTTCGGCGTAGCGGCGGAGCCCGGTGCCTGGAGCGCCGGCCAGGAGCACATCGTCTGGCTGATCCGCGCC
CCACGGGTACTGCTCGGTGCCTGCGTCGGCGCCGGCCTGGCGCTGGTGGGAGCGGCGCTGCAGGCGGTCACG
CGCAATCCGCTGGCCGATCCGCACCTGCTCGGCGCCACCTCCGGCGCGACCCTCGGCGCGGTGCTGGTGGTG
CTCTACATCGGCGAGGTGATCGGCCTGCTGACCCTGCCGCTGGCGGCCTTCCTCGGCGCCCTCGGCAGCATG
CTGCTGGTGCTCGGCGTGGCCAGCCGCGGCCGCCGCCTGGGCAGCGACCGGCTGTTGCTGGCGGGGGTCGCG
GTGTCCTTCGTGCTCCTGGCGCTGGCCAACCTGCTGCTGTTCCTCGGCGACCACCGCGCCGCCTCCTCGGTG
CTGTTCTGGATGCTCGGCGGCCTCGGCCTGGCGCGCTGGTCGCTGATCTGGCTGCCGGCGCTGTGCGTGGCC
GGCGGCCTGCTGGTGCTGCTCGGGCTGGGCCGTGCGCTGAACGCGCTGATGGCCGGCGAACAGACCGCCGTG
ACCCTCGGCCTGGACGCCCGCCGCGTACGCCTGTGGGTCTTCGTCTGCTGCTCGCTGCTGACCGGCGTGCTG
GTCTCGGTGAGCGGCGCCATCGGCTTCGTCGGACTCATGCTGCCGCACGCCGCGCGCCTGCTGGTGGGCGCC
GAGCACCGCCGGCTGCTGCCGGTGTGCGCCCTGCTCGGCGCGCTGTTCCTGGTCTGGATGGATGTCGCCGCG
CGCACCCTGATCGCCCCCCAGGACCTGCCCATCGGCATCGCCACCGCGGCCATCGGCGGGCTGTTCTTCATT
CTCCTGCTGCGTCGCCGCAGCTGA
Translation:
MTLFRSPRAYCLLLGSLVLLLGLSCVVALGFGPARLDSGLVGRIVLQRLFGVAAEPGAWSAGQEHIVWLIRA
PRVLLGACVGAGLALVGAALQAVTRNPLADPHLLGATSGATLGAVLVVLYIGEVIGLLTLPLAAFLGALGSM
LLVLGVASRGRRLGSDRLLLAGVAVSFVLLALANLLLFLGDHRAASSVLFWMLGGLGLARWSLIWLPALCVA
GGLLVLLGLGRALNALMAGEQTAVTLGLDARRVRLWVFVCCSLLTGVLVSVSGAIGFVGLMLPHAARLLVGA
EHRRLLPVCALLGALFLVWMDVAARTLIAPQDLPIGIATAAIGGLFFILLLRRRS*
AnnotationID:2126GeneID:2118
AnnotatorUID: diggins
Modification Date/Time: 2004-12-01 19:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:btuC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative vitamin B12 transport system permease protein
Functional Category Confidence Code:5
COGs:COG0609,pfam01032,COG4139
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58982.1| (AE016876) haemin ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 346

 Score =  429 bits (1102), Expect = e-119
 Identities = 219/332 (65%), Positives = 267/332 (80%)

>emb|CAC14365.1| (AL939107) Fe uptake system integral membrane protein [Streptomyces
           coelicolor A3(2)]
          Length = 371

 Score =  305 bits (780), Expect = 3e-82
 Identities = 166/336 (49%), Positives = 222/336 (66%), Gaps = 2/336 (0%)

>dbj|BAB53829.1| (AP003013) ABC transporter, permease protein [Mesorhizobium loti]
          Length = 349

 Score =  263 bits (672), Expect = 1e-69
 Identities = 141/278 (50%), Positives = 184/278 (66%), Gaps = 4/278 (1%)






 
Structural Features:
COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component 
[Inorganic ion transport and metabolism]

pfam01032, FecCD, FecCD transport family.

COG4139, BtuC, ABC-type cobalamin transport system, permease component 
[Coenzyme metabolism]








   
Genomic Context:






   
Comment:


















    ReferenceID:4239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36143




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2118_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2118
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3626
                           PA2914_tr
                           translation of PA2914
                           343
                           99.12
                           99.70
                           0
                           1689.0
     

     
     
111826
                           gb|AAG06302.1|AE004717_8
                           (AE004717) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           343
                           99.12
                           99.70
                           0
                           1689.0
     

     
     
111828
                           gb|AAQ59234.1|
                           (AE016915) vitamin B12 transport system permease protein [Chromobacterium violaceum ATCC 12472]
                           345
                           63.76
                           76.23
                           15
                           1045.0
     

     
     
111827
                           gb|AAO58982.1|
                           (AE016876) haemin ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           63.61
                           77.65
                           9
                           1098.0
     

     
     
111829
                           emb|CAC14365.1|
                           (AL939107) Fe uptake system integral membrane protein [Streptomyces coelicolor A3(2)]
                           372
                           44.62
                           59.94
                           30
                           773.0
     

     






      

          
GC ORFID: 45120How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2914Glimmer Score: 

          
Start: 2654362Stop: 2655393

          
Length: 1032


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2914 translation of PA2914Homolog Bit Score 655.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2947 (ORF: BLASTX 427.0), psyr_15may02_Scaffold11_revised_gene1897 (ORF: BLASTX 226.0), t_PA4707 (ORF: BLASTX 210.0), t_PA2914 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGTTCCGCAGCCCTCGCGCCTATTGCCTGTTGCTGGGCAGCCTGGTCCTGTTGCTCGGCCTGTCC 
TGCGTGGTCGCCCTCGGCTTCGGTCCGGCGCGACTGGACAGCGGCCTGGTCGGCCGCATCGTCCTCCAGCGC 
CTGTTCGGCGTAGCGGCGGAGCCCGGTGCCTGGAGCGCCGGCCAGGAGCACATCGTCTGGCTGATCCGCGCC 
CCACGGGTACTGCTCGGTGCCTGCGTCGGCGCCGGCCTGGCGCTGGTGGGAGCGGCGCTGCAGGCGGTCACG 
CGCAATCCGCTGGCCGATCCGCACCTGCTCGGCGCCACCTCCGGCGCGACCCTCGGCGCGGTGCTGGTGGTG 
CTCTACATCGGCGAGGTGATCGGCCTGCTGACCCTGCCGCTGGCGGCCTTCCTCGGCGCCCTCGGCAGCATG 
CTGCTGGTGCTCGGCGTGGCCAGCCGCGGCCGCCGCCTGGGCAGCGACCGGCTGTTGCTGGCGGGGGTCGCG 
GTGTCCTTCGTGCTCCTGGCGCTGGCCAACCTGCTGCTGTTCCTCGGCGACCACCGCGCCGCCTCCTCGGTG 
CTGTTCTGGATGCTCGGCGGCCTCGGCCTGGCGCGCTGGTCGCTGATCTGGCTGCCGGCGCTGTGCGTGGCC 
GGCGGCCTGCTGGTGCTGCTCGGGCTGGGCCGTGCGCTGAACGCGCTGATGGCCGGCGAACAGACCGCCGTG 
ACCCTCGGCCTGGACGCCCGCCGCGTACGCCTGTGGGTCTTCGTCTGCTGCTCGCTGCTGACCGGCGTGCTG 
GTCTCGGTGAGCGGCGCCATCGGCTTCGTCGGACTCATGCTGCCGCACGCCGCGCGCCTGCTGGTGGGCGCC 
GAGCACCGCCGGCTGCTGCCGGTGTGCGCCCTGCTCGGCGCGCTGTTCCTGGTCTGGATGGATGTCGCCGCG 
CGCACCCTGATCGCCCCCCAGGACCTGCCCATCGGCATCGCCACCGCGGCCATCGGCGGGCTGTTCTTCATT 
CTCCTGCTGCGTCGCCGCAGCTGA