ViewGene

Locus Name:
GeneID:
Location:

GeneID:2117
TrivialName: PA14_31770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31770
PAO1 Ortholog Locus:PA2535
Sequence Length:996
Protein Length:331
Start: 2764402
Stop: 2763407
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05923.1|AE004681_5 (AE004681) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 329/331 (99%), Positives = 331/331 (100%)
Sequence:
ATGAAAACCCGTCAACTCGGCCACAACGGCCCTTCCGTCTCCGCCATCGGCCTCGGCTGCATGGGCATGACC
GACTTCTACACCACCGGCGGCGACCGCCAGGAGGCCATCGCCACCCTGCATCGCGCCGTGGAACTCGGGCTG
AACTTCTTCGATACCGCCGACATGTACGGCCCGCACAGCAACGAGGAACTGCTCGGCGAGGCCCTGCGCGGC
AAACGCGAGCAGGTGTTCCTGGCCAGCAAGTTCGGCATCATCCGCGACCCTGCCAATCCCCAGGCGCGCGGC
GTCGACGGCAGCCCGGCGTATATCCGCCGCGCCATCGAAGGCAGCCTGAAGCGCCTCGGTACCGACCGCCTG
GACCTTTACTATCAGCACCGCATGGACCCGCAGGTGCCCATCGAGGACAGCGTCGGCGCCCTCGCCGACCTG
GTGAAGGCCGGCAAGATCCGCCACATCGGCCTCAGCGAAGCCTCGGCGGAAACCCTCGAACGTGCCCACCGG
GTGCACCCGATCAGCGCGTTGCAGAGCGAGTACTCGCTGTGGACTCGCGATCCGGAGGACACCGGGGTGCTC
GCCGCCTGCCGTCGCCTGGGCATCGCCTTCGTCCCCTACAGCCCGCTGGGCCGAGGTTTCCTTACCGGCACC
CTGAAGCGCCCGGAAGACTTCGCCGCCGACGATTACCGTCGTTTCAGCCCGCGCTTCCAGGGCGAGAACTTC
GCGAAGAACCTGAAGCTGGTGGACAAGGTCGGCGAACTGGCCGCGGCCAAGGGCGTGAAACCCTCGCAACTG
GCGCTGGCCTGGGTGCTGGCGCAGGGCGATGACCTGATCCCGATTCCCGGCACCAAGCAGCGGCGCTACCTG
GAGGAGAACGTCGCCGCGACGGAACTGCGCCTGAGCGCGGCGGAACTGGCCGAGCTGGATGCGATCTTCCCC
GCCGAGGCGGTCGCCGGCAGTCGCTATAGCGAGGAAGGCATGCGCCTGGTCAATCTCTGA
Translation:
MKTRQLGHNGPSVSAIGLGCMGMTDFYTTGGDRQEAIATLHRAVELGLNFFDTADMYGPHSNEELLGEALRG
KREQVFLASKFGIIRDPANPQARGVDGSPAYIRRAIEGSLKRLGTDRLDLYYQHRMDPQVPIEDSVGALADL
VKAGKIRHIGLSEASAETLERAHRVHPISALQSEYSLWTRDPEDTGVLAACRRLGIAFVPYSPLGRGFLTGT
LKRPEDFAADDYRRFSPRFQGENFAKNLKLVDKVGELAAAKGVKPSQLALAWVLAQGDDLIPIPGTKQRRYL
EENVAATELRLSAAELAELDAIFPAEAVAGSRYSEEGMRLVNL*
AnnotationID:2125GeneID:2117
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:12
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA2535
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative aldo-keto reductase
Functional Category Confidence Code:5
COGs:COG0667,pfam00248
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56291.1| (AE016865) oxidoreductase, aldo/keto reductase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 331

 Score =  493 bits (1268), Expect = e-139
 Identities = 243/331 (73%), Positives = 285/331 (86%), Gaps = 2/331 (0%)

>gb|AAM42939.1| (AE012487) oxidoreductase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 331

 Score =  438 bits (1127), Expect = e-122
 Identities = 208/330 (63%), Positives = 260/330 (78%)

>gb|AAO67874.1| (AE016834) putative aldo/keto reductase [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 329

 Score =  404 bits (1039), Expect = e-112
 Identities = 197/330 (59%), Positives = 254/330 (76%), Gaps = 2/330 (0%)
Structural Features:
COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 
[Energy production and conversion]
CD-Length = 316 residues,  99.7% aligned
Score =  320 bits (822), Expect = 1e-88
Identities = 144/321 (44%), Positives = 188/321 (58%), Gaps = 9/321 (2%)

pfam00248, Aldo_ket_red, Aldo/keto reductase family.
CD-Length = 279 residues, 100.0% aligned
Score =  192 bits (490), Expect = 4e-50
Identities = 101/322 (31%), Positives = 147/322 (45%), Gaps = 59/322 (18%)
Genomic Context:
Comment:
ReferenceID:4237
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21383
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33095
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2117_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2117

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3625 PA2535_tr translation of PA2535 331 99.39 99.99 0 1690.0
111782 gb|AAG05923.1|AE004681_5 (AE004681) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 331 99.39 99.99 0 1690.0
111783 gb|AAO56291.1| (AE016865) oxidoreductase, aldo/keto reductase family [Pseudomonas syringae pv. tomato str. DC3000] 332 73.19 85.84 2 1268.0
111786 gb|AAF11806.1|AE002058_6 (AE002058) aldo/keto reductase [Deinococcus radiodurans] [Deinococcus radiodurans R1] 336 64.28 77.97 14 1108.0
111788 dbj|BAC88779.1| (AP006570) gll0838 [Gloeobacter violaceus PCC 7421] 331 63.74 80.66 5 1080.0
GC ORFID: 45119How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2535Glimmer Score:
Start: 2189524Stop: 2190519
Length: 996
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2535 translation of PA2535Homolog Bit Score 655.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7012 (ORF: BLASTX 488.0), t_PA2535 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAACCCGTCAACTCGGCCACAACGGCCCTTCCGTCTCCGCCATCGGCCTCGGCTGCATGGGCATGACC
GACTTCTACACCACCGGCGGCGACCGCCAGGAGGCCATCGCCACCCTGCATCGCGCCGTGGAACTCGGGCTG
AACTTCTTCGATACCGCCGACATGTACGGCCCGCACAGCAACGAGGAACTGCTCGGCGAGGCCCTGCGCGGC
AAACGCGAGCAGGTGTTCCTGGCCAGCAAGTTCGGCATCATCCGCGACCCTGCCAATCCCCAGGCGCGCGGC
GTCGACGGCAGCCCGGCGTATATCCGCCGCGCCATCGAAGGCAGCCTGAAGCGCCTCGGTACCGACCGCCTG
GACCTTTACTATCAGCACCGCATGGACCCGCAGGTGCCCATCGAGGACAGCGTCGGCGCCCTCGCCGACCTG
GTGAAGGCCGGCAAGATCCGCCACATCGGCCTCAGCGAAGCCTCGGCGGAAACCCTCGAACGTGCCCACCGG
GTGCACCCGATCAGCGCGTTGCAGAGCGAGTACTCGCTGTGGACTCGCGATCCGGAGGACACCGGGGTGCTC
GCCGCCTGCCGTCGCCTGGGCATCGCCTTCGTCCCCTACAGCCCGCTGGGCCGAGGTTTCCTTACCGGCACC
CTGAAGCGCCCGGAAGACTTCGCCGCCGACGATTACCGTCGTTTCAGCCCGCGCTTCCAGGGCGAGAACTTC
GCGAAGAACCTGAAGCTGGTGGACAAGGTCGGCGAACTGGCCGCGGCCAAGGGCGTGAAACCCTCGCAACTG
GCGCTGGCCTGGGTGCTGGCGCAGGGCGATGACCTGATCCCGATTCCCGGCACCAAGCAGCGGCGCTACCTG
GAGGAGAACGTCGCCGCGACGGAACTGCGCCTGAGCGCGGCGGAACTGGCCGAGCTGGATGCGATCTTCCCC
GCCGAGGCGGTCGCCGGCAGTCGCTATAGCGAGGAAGGCATGCGCCTGGTCAATCTCTGA