ViewGene
Locus Name:
GeneID:
Location:

GeneID:2116
TrivialName: PA14_39300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39300
PAO1 Ortholog Locus:PA1949
Sequence Length:1014
Protein Length:337
Start: 3499818
Stop: 3498805
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05337.1|AE004621_8 (AE004621) ribose operon repressor RbsR [Pseudomonas aeruginosa PAO1]
Identities = 336/337 (99%), Positives = 337/337 (100%)
Sequence:
ATGGCGACAATGAAGGACGTGGCGGCGATGGCGGGGGTTTCCTTCACCACCGTATCGCATGTGGTGAACAGG
ACGCGGCCGGTCAGCGACGCGGTGCGCAAGAAGGTCGAGGACGCCATCGCGCAGCTGCACTACGTGCCCAGC
GCGGTGGCGCGCTCGCTGAAGGTGCGCACCACCTCGATCATCGGCCTGCTGGTGCCGAACAGCACCAACCCG
TATTTCGCCGAGCTGTCGCGGGGCATCGAGGATTGCTGCGAGCGCAACGGCTACTGCGTGATCCTCTGCAAC
TCCGACGACAACCCGCAGAAGCAGGCCAACTACCTGCGCGTGCTCCAGGAGAAACGCATCGACGGCCTGGTC
CTGGCGTCCGCCGGCGGCGACGGCGCGCTGGCCAAGGGGCTGGCGAACATGCGCACGCCGACCGTGATCGTC
GACCGCGAGGTGGAAGGCGTGGAAGCCGACCGGGTGCAGATCGACCATGAGATGGGCGCCTACCTGGCGACC
CGCCACCTGCTCGAACTGGGCCATCGCGACATCGCCTGCATCGGCGGGCCGCTGTCGACCAAGGTCTCGACG
CTGCGGGTCGAGGGCTACCGGCGGGCGATGGCCAAGGCCGGCCTGGAGGTGCGCCCGCAGTGGCTGCTGGAA
AGCGAGTTCAGCAGCCCCGGCGGCTACCACGCGGCGCTCGGCCTGCTGGGCGGCGAGGGCGAGCGACCGACG
GCGATCGTCGCCGGCAACGACATGATCGGCATCGGCGTGCTGCGCGCCGCGGCCGAGCTGAATATCAGGGTG
CCGCACGAACTGTCGGTGATCGGCTTCGACGATATCGAGCTGAGCCGCTTCGTGTTTCCCGCCTTGACCACC
GTGGGCCAGTCGATCCGCCTGCTCGGCGAGATCGCCGCGCAACTGCTGCTGCAACGCATCGCCGAGCGCGAG
GAGCCGATGCAGCGGCGGGTGGTGGCGCCGGCGCTGATCCTGCGCGAATCCACCGCGCCGCCGCTGGTGCGG
GTCTGA
Translation:
MATMKDVAAMAGVSFTTVSHVVNRTRPVSDAVRKKVEDAIAQLHYVPSAVARSLKVRTTSIIGLLVPNSTNP
YFAELSRGIEDCCERNGYCVILCNSDDNPQKQANYLRVLQEKRIDGLVLASAGGDGALAKGLANMRTPTVIV
DREVEGVEADRVQIDHEMGAYLATRHLLELGHRDIACIGGPLSTKVSTLRVEGYRRAMAKAGLEVRPQWLLE
SEFSSPGGYHAALGLLGGEGERPTAIVAGNDMIGIGVLRAAAELNIRVPHELSVIGFDDIELSRFVFPALTT
VGQSIRLLGEIAAQLLLQRIAEREEPMQRRVVAPALILRESTAPPLVRV*
AnnotationID:2124GeneID:2116
AnnotatorUID: urbach
Modification Date/Time: 2003-12-04 10:10:51
Gene Name:rbsR
Confidence Code:2
GeneProduct:ribose operon repressor RbsR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Homolog: t_PA1949 translation of PA1949






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21381




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2116
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3624
                           PA1949_tr
                           translation of PA1949
                           337
                           99.70
                           99.99
                           0
                           1690.0
     

     
     
111736
                           gb|AAG05337.1|AE004621_8
                           (AE004621) ribose operon repressor RbsR [Pseudomonas aeruginosa PAO1]
                           337
                           99.70
                           99.99
                           0
                           1690.0
     

     
     
111737
                           gb|AAN68069.1|AE016439_4
                           (AE016783) ribose operon repressor [Pseudomonas putida KT2440]
                           345
                           69.27
                           80.86
                           13
                           1167.0
     

     
     
111738
                           gb|AAO55881.1|
                           (AE016864) ribose operon repressor [Pseudomonas syringae pv. tomato str. DC3000]
                           340
                           65.29
                           80.00
                           5
                           1125.0
     

     
     
111739
                           emb|CAD14716.1|
                           (AL646062) PROBABLE TRANSCRIPTIONAL REGULATORY DNA-BINDING REPRESSOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           348
                           60.91
                           72.41
                           12
                           1024.0
     

     






      

          
GC ORFID: 45118How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1949Glimmer Score: 

          
Start: 1454093Stop: 1455106

          
Length: 1014


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1949 translation of PA1949Homolog Bit Score 655.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5856 (ORF: BLASTX 446.0), t_PA1949 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACAATGAAGGACGTGGCGGCGATGGCGGGGGTTTCCTTCACCACCGTATCGCATGTGGTGAACAGG 
ACGCGGCCGGTCAGCGACGCGGTGCGCAAGAAGGTCGAGGACGCCATCGCGCAGCTGCACTACGTGCCCAGC 
GCGGTGGCGCGCTCGCTGAAGGTGCGCACCACCTCGATCATCGGCCTGCTGGTGCCGAACAGCACCAACCCG 
TATTTCGCCGAGCTGTCGCGGGGCATCGAGGATTGCTGCGAGCGCAACGGCTACTGCGTGATCCTCTGCAAC 
TCCGACGACAACCCGCAGAAGCAGGCCAACTACCTGCGCGTGCTCCAGGAGAAACGCATCGACGGCCTGGTC 
CTGGCGTCCGCCGGCGGCGACGGCGCGCTGGCCAAGGGGCTGGCGAACATGCGCACGCCGACCGTGATCGTC 
GACCGCGAGGTGGAAGGCGTGGAAGCCGACCGGGTGCAGATCGACCATGAGATGGGCGCCTACCTGGCGACC 
CGCCACCTGCTCGAACTGGGCCATCGCGACATCGCCTGCATCGGCGGGCCGCTGTCGACCAAGGTCTCGACG 
CTGCGGGTCGAGGGCTACCGGCGGGCGATGGCCAAGGCCGGCCTGGAGGTGCGCCCGCAGTGGCTGCTGGAA 
AGCGAGTTCAGCAGCCCCGGCGGCTACCACGCGGCGCTCGGCCTGCTGGGCGGCGAGGGCGAGCGACCGACG 
GCGATCGTCGCCGGCAACGACATGATCGGCATCGGCGTGCTGCGCGCCGCGGCCGAGCTGAATATCAGGGTG 
CCGCACGAACTGTCGGTGATCGGCTTCGACGATATCGAGCTGAGCCGCTTCGTGTTTCCCGCCTTGACCACC 
GTGGGCCAGTCGATCCGCCTGCTCGGCGAGATCGCCGCGCAACTGCTGCTGCAACGCATCGCCGAGCGCGAG 
GAGCCGATGCAGCGGCGGGTGGTGGCGCCGGCGCTGATCCTGCGCGAATCCACCGCGCCGCCGCTGGTGCGG 
GTCTGA