ViewGene
Locus Name:
GeneID:
Location:

GeneID:2114
TrivialName: PA14_71570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71570
PAO1 Ortholog Locus:PA5422
Sequence Length:957
Protein Length:318
Start: 6376091
Stop: 6377047
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08807.1|AE004955_1 (AE004955) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 316/318 (99%), Positives = 318/318 (100%)
Sequence:
GTGATACTGCTGCCATCCATTCGCCTCCCGGAGACCGCCATGAGCACCGATAGCCCGATCAACCGCGTCGAA
CAGGTACAGGTCGACGACCTGGCCTGCTGGCGCATCCACACCGCCCATGGCGAGGCGCTGATCGCCCAGCAG
GGCGCGCAACTGCTCAGCTACCAGCCCCACGAACAGCCGCCGCTGGTCTGGCTCAGCGACGAGGCCGGCTAC
CGGCGCGGGCAGTCGGTACGCGGCGGGGTGCCGGTGTGCTGGCCGTGGTTCGGTCCGCTGGAGCGCAACCCG
CAGGAAGTCCGCGGCCAGGTGGAAGATGGCCTGAAGGCGCCCGCCCACGGGCTGGTTCGGGCGGTCGACTGG
GAAATCGACGACATCGCCGAGGAGGACGGCGACCTCTGCGTCAGCTTCCGCCTCGACGCCCCCGATGGCCTC
CCCGGCTGGCCGCACCCGGCGGCGCTGCGCATGCTGTTCCGCTTCGGCGAGCGCCTGACCCTGCGACTCACC
AGCGAGAACCTCGGCAGCAAGCCGCTGGTGCTCAGCCAGGCACTGCACACCTACTTCGCGGTCAGCGACAGC
CGCGAGATCGCCATCGAGGGCCTGGAAGGCGCGCGCTACATCGAGACCCTGGAGAACTGGGAAGAACGCACT
CAGCACGGCGCGGTACGGGTCAAGGGCGAACTGGACCGCATCTACCTCGGTCTCGAACGCGACCTGCTGATC
AAGGACCCGCGCTGGGAACGCAGCATCCACCTGCACGCCCTCGACTCGCGTTCGGCGGTGGTCTGGAACCCC
TGGGTGGACAAGTCCCGGCGTCTTTCGCAGTTCGCCGACGACGCCTGGCAGCAGATGCTCTGCATCGAGACG
GGGCGGGTCTGGGACGACCTCATGGTGGTCGCCCCCGGGCGCAGCGAAAGCTTTGGCGTGCAGATCTGGAGC
GAGCCGCTGAAACGACCCTGA
Translation:
MILLPSIRLPETAMSTDSPINRVEQVQVDDLACWRIHTAHGEALIAQQGAQLLSYQPHEQPPLVWLSDEAGY
RRGQSVRGGVPVCWPWFGPLERNPQEVRGQVEDGLKAPAHGLVRAVDWEIDDIAEEDGDLCVSFRLDAPDGL
PGWPHPAALRMLFRFGERLTLRLTSENLGSKPLVLSQALHTYFAVSDSREIAIEGLEGARYIETLENWEERT
QHGAVRVKGELDRIYLGLERDLLIKDPRWERSIHLHALDSRSAVVWNPWVDKSRRLSQFADDAWQQMLCIET
GRVWDDLMVVAPGRSESFGVQIWSEPLKRP*
AnnotationID:2122GeneID:2114
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 14:02:40
Gene Name:
Confidence Code:3
GeneProduct:putative aldose 1-epimerase
Cell Localization:()
Synonyms:PA5422
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0676,pfam01263
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58909.1| (AE016876) aldose 1-epimerase family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 303

 Score =  321 bits (822), Expect = 4e-87
 Identities = 149/294 (50%), Positives = 197/294 (67%), Gaps = 1/294 (0%)






 
Structural Features:
COG0676, Uncharacterized enzymes related to aldose 1-epimerase 
[Carbohydrate transport and metabolism]
CD-Length = 287 residues, 100.0% aligned
Score =  326 bits (838), Expect = 1e-90
Identities = 116/311 (37%), Positives = 151/311 (48%), Gaps = 24/311 (7%)

pfam01263, Aldose_epim, Aldose 1-epimerase.
CD-Length = 301 residues,  98.3% aligned
Score =  135 bits (342), Expect = 4e-33
Identities = 66/314 (21%), Positives = 103/314 (32%), Gaps = 56/314 (17%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14503




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21377




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34685




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2114_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2114
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3622
                           PA5422_tr
                           translation of PA5422
                           318
                           99.37
                           99.99
                           0
                           1693.0
     

     
     
111731
                           gb|AAG08807.1|AE004955_1
                           (AE004955) hypothetical protein PA5422 [Pseudomonas aeruginosa PAO1]
                           318
                           99.05
                           99.99
                           0
                           1690.0
     

     
     
111732
                           gb|AAN70897.1|AE016734_1
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           319
                           49.52
                           63.32
                           22
                           830.0
     

     
     
111733
                           gb|AAO58909.1|
                           (AE016876) aldose 1-epimerase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           320
                           47.81
                           63.12
                           19
                           825.0
     

     






      

          
GC ORFID: 45116How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5422Glimmer Score: 

          
Start: 5639780Stop: 5640736

          
Length: 957


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5422 translation of PA5422Homolog Bit Score 656.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2907 (ORF: BLASTX 198.0), t_PA5422 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATACTGCTGCCATCCATTCGCCTCCCGGAGACCGCCATGAGCACCGATAGCCCGATCAACCGCGTCGAA 
CAGGTACAGGTCGACGACCTGGCCTGCTGGCGCATCCACACCGCCCATGGCGAGGCGCTGATCGCCCAGCAG 
GGCGCGCAACTGCTCAGCTACCAGCCCCACGAACAGCCGCCGCTGGTCTGGCTCAGCGACGAGGCCGGCTAC 
CGGCGCGGGCAGTCGGTACGCGGCGGGGTGCCGGTGTGCTGGCCGTGGTTCGGTCCGCTGGAGCGCAACCCG 
CAGGAAGTCCGCGGCCAGGTGGAAGATGGCCTGAAGGCGCCCGCCCACGGGCTGGTTCGGGCGGTCGACTGG 
GAAATCGACGACATCGCCGAGGAGGACGGCGACCTCTGCGTCAGCTTCCGCCTCGACGCCCCCGATGGCCTC 
CCCGGCTGGCCGCACCCGGCGGCGCTGCGCATGCTGTTCCGCTTCGGCGAGCGCCTGACCCTGCGACTCACC 
AGCGAGAACCTCGGCAGCAAGCCGCTGGTGCTCAGCCAGGCACTGCACACCTACTTCGCGGTCAGCGACAGC 
CGCGAGATCGCCATCGAGGGCCTGGAAGGCGCGCGCTACATCGAGACCCTGGAGAACTGGGAAGAACGCACT 
CAGCACGGCGCGGTACGGGTCAAGGGCGAACTGGACCGCATCTACCTCGGTCTCGAACGCGACCTGCTGATC 
AAGGACCCGCGCTGGGAACGCAGCATCCACCTGCACGCCCTCGACTCGCGTTCGGCGGTGGTCTGGAACCCC 
TGGGTGGACAAGTCCCGGCGTCTTTCGCAGTTCGCCGACGACGCCTGGCAGCAGATGCTCTGCATCGAGACG 
GGGCGGGTCTGGGACGACCTCATGGTGGTCGCCCCCGGGCGCAGCGAAAGCTTTGGCGTGCAGATCTGGAGC 
GAGCCGCTGAAACGACCCTGA