ViewGene

Locus Name:
GeneID:
Location:

GeneID:2113
TrivialName: PA14_68260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68260
PAO1 Ortholog Locus:PA5167
Sequence Length:996
Protein Length:331
Start: 6089362
Stop: 6090357
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08552.1|AE004929_7 (AE004929) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 331/331 (100%), Positives = 331/331 (100%)
Sequence:
ATGCTCAAGCACACCGCGAAGGCGCTCGTCTGCGCACTTTCCCTGACCGTCGCCGGAATCGTCCAGGCGGCC
GACCCGATCGTCATCAAGTTCTCCCACGTCGTCGCCGAGCACACGCCCAAGGGCCAGGGCGCGCTGCTGTTC
AAGAAACTGGTGGAGGAACGCCTACCGGGCAAGGTCAAGGTGGAGGTCTACCCGAACTCGTCGCTGTTCGGC
GACGGCAAGGAAATGGAGGCCCTGCTGCTAGGCGACGTGCAGATCATCGCGCCGTCGCTGGCCAAGTTCGAG
CAGTACACCAAGAAACTGCAGATCTTCGACCTGCCGTTCCTGTTCGACAACATCCAGGCGGTCGACCGCTTC
CAGCAGAGCCCGCAGGGCAAGGAGCTGCTGACCTCGATGCAGGACAAGGGCATCACCGGCCTCGGCTACTGG
CACAACGGGATGAAGCAACTGTCCGCCAACAAGCCCCTGCGCGAGCCGAAGGACGCCCGCGGCCTGAAGTTC
CGCGTGCAGGCCTCCAAGGTGCTCGAGGAACAGTTCAAGGCGGTGCGCGCCAACCCGCGCAAGATGAGCTTC
GCCGAGGTCTACCAGGGCCTGCAGACCGGCGTGGTCAACGGTACCGAGAACCCCTGGTCGAACATCTACTCG
CAGAAGATGCACGAAGTGCAGAAGTACATCACCGAATCCGACCACGGCGTGCTGGACTACATGGTGATCACC
AACACCAAGTTCTGGAACGGCCTGCCGGAAGACGTGCGCGGCGTTCTGGCCAAGACCATGGACGAGGTGACC
GTGGAGGTGAACAAGCAGGCCGAGGCGCTCAACCAGGGCGACAAGCAGCGCATCGTCGAGGCCAAGACCAGC
GAGATCATCGAACTCACTCCCGAACAGCGGGCCGAATGGCGCAAGGCCATGCAGCCGGTGTGGAAGAAGTTC
GAAGGTGAGATCGGCGCCGACCTGATCAAGGCCGCCGAAGCCGCCAACCAGGCTCAATAA
Translation:
MLKHTAKALVCALSLTVAGIVQAADPIVIKFSHVVAEHTPKGQGALLFKKLVEERLPGKVKVEVYPNSSLFG
DGKEMEALLLGDVQIIAPSLAKFEQYTKKLQIFDLPFLFDNIQAVDRFQQSPQGKELLTSMQDKGITGLGYW
HNGMKQLSANKPLREPKDARGLKFRVQASKVLEEQFKAVRANPRKMSFAEVYQGLQTGVVNGTENPWSNIYS
QKMHEVQKYITESDHGVLDYMVITNTKFWNGLPEDVRGVLAKTMDEVTVEVNKQAEALNQGDKQRIVEAKTS
EIIELTPEQRAEWRKAMQPVWKKFEGEIGADLIKAAEAANQAQ*
AnnotationID:2121GeneID:2113
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 14:02:34
Gene Name:
Confidence Code:3
GeneProduct:probable c4-dicarboxylate-binding protein
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1638, COG4663
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Third of five ORF cluster.
Comment:
ReferenceID:4229
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17001
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA5167_CDS.cgi
URL:
ReferenceID:21375
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2113

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3619 PA5167_tr translation of PA5167 331 99.99 99.99 0 1693.0
111713 gb|AAG08552.1|AE004929_7 (AE004929) probable c4-dicarboxylate-binding protein [Pseudomonas aeruginosa PAO1] 331 99.99 99.99 0 1693.0
111714 emb|CAC44171.1| (AJ313422) probable C4 dicarboxylate binding protein [Pseudomonas stutzeri] 331 83.38 91.23 0 1436.0
3620 PA0884_tr translation of PA0884 331 73.11 86.70 0 1268.0
111715 gb|AAG04273.1|AE004523_1 (AE004523) probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas aeruginosa PAO1] 331 73.11 86.70 0 1268.0
GC ORFID: 45115How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5167Glimmer Score:
Start: 5353048Stop: 5354043
Length: 996
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5167 translation of PA5167Homolog Bit Score 656.0
Other Homologs: t_PA0884 (ORF: BLASTX 493.0), t_PA4616 (ORF: BLASTX 365.0), t_PA5167 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCAAGCACACCGCGAAGGCGCTCGTCTGCGCACTTTCCCTGACCGTCGCCGGAATCGTCCAGGCGGCC
GACCCGATCGTCATCAAGTTCTCCCACGTCGTCGCCGAGCACACGCCCAAGGGCCAGGGCGCGCTGCTGTTC
AAGAAACTGGTGGAGGAACGCCTACCGGGCAAGGTCAAGGTGGAGGTCTACCCGAACTCGTCGCTGTTCGGC
GACGGCAAGGAAATGGAGGCCCTGCTGCTAGGCGACGTGCAGATCATCGCGCCGTCGCTGGCCAAGTTCGAG
CAGTACACCAAGAAACTGCAGATCTTCGACCTGCCGTTCCTGTTCGACAACATCCAGGCGGTCGACCGCTTC
CAGCAGAGCCCGCAGGGCAAGGAGCTGCTGACCTCGATGCAGGACAAGGGCATCACCGGCCTCGGCTACTGG
CACAACGGGATGAAGCAACTGTCCGCCAACAAGCCCCTGCGCGAGCCGAAGGACGCCCGCGGCCTGAAGTTC
CGCGTGCAGGCCTCCAAGGTGCTCGAGGAACAGTTCAAGGCGGTGCGCGCCAACCCGCGCAAGATGAGCTTC
GCCGAGGTCTACCAGGGCCTGCAGACCGGCGTGGTCAACGGTACCGAGAACCCCTGGTCGAACATCTACTCG
CAGAAGATGCACGAAGTGCAGAAGTACATCACCGAATCCGACCACGGCGTGCTGGACTACATGGTGATCACC
AACACCAAGTTCTGGAACGGCCTGCCGGAAGACGTGCGCGGCGTTCTGGCCAAGACCATGGACGAGGTGACC
GTGGAGGTGAACAAGCAGGCCGAGGCGCTCAACCAGGGCGACAAGCAGCGCATCGTCGAGGCCAAGACCAGC
GAGATCATCGAACTCACTCCCGAACAGCGGGCCGAATGGCGCAAGGCCATGCAGCCGGTGTGGAAGAAGTTC
GAAGGTGAGATCGGCGCCGACCTGATCAAGGCCGCCGAAGCCGCCAACCAGGCTCAATAA