ViewGene
Locus Name:
GeneID:
Location:

GeneID:2111
TrivialName: PA14_04700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04700
PAO1 Ortholog Locus:PA0360
Sequence Length:987
Protein Length:328
Start: 417456
Stop: 418442
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03749.1|AE004474_1 (AE004474) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 323/328 (98%), Positives = 325/328 (99%)
Sequence:
ATGTTCAGTCAGTGGGTGTTCCTGTCCGTCCTTGCTCTTGCCGTACCCTCGTTCGCCTGGGCGGAGGATGCG
GTGTCCGACCTCGCCAAGGAGCAGTCCAAGGCCGAGCAGGGCGACAAGCGCGGCGATGAACTGTTCGCCGAA
TTCACCCGCCTCCGCCAGGCCGCCGAGACGGGGGAGCCGCAGGCTCTGTTCGATTTCGGCGCCTACTTCTAC
CAGCAACAGAACTACGCCAGCGCGCGCGAATGGTGGGGCAAGGCGGCCGCTGCGGGGATGGTCCGCGCGCAG
ATCCAACTGGCCATGCTCTATCGCGATGGTGACGGCGGGCCACAGGACAAGACCGAGGCGGCACGCTGGTTC
CGGAAGGCCGCGGAGCAGGGGGATGCCGCCGCCCAGAATGAAATGGGCGTTCTCTACTGGAGAGGCGAAGGG
GTCGACCAGGACCGGGTGAAGGCCGGGACCTGGTTCGAACGTGCGGCGGCCAGCGGTAGCGAAGACGCCGAA
ACCAATCTGGGATGGTTCTACCTGGACGACTCGCAAGGCGTCTATTCCGCCACTTCAGACGAGGAAGCCGCC
CTGCTGGACCGTTATGCCGGCAGCCGGGAAAAGGCCTTCCAGTGGTTCTGCAAGGCTGCGACCCAGGGAGAT
GCCCGTGCCCAGTTCAAGGTGGGCGAGGCCTACTGGAACGGTTCCGGTGCCGGGATGAACAAGCTGCAAGCA
CGGCTCTGGCTGGAAAAGGCCGCACAGCAGCAGGATGCGGATGCCATCGCCTGGCTGGAGAGCGCCGCGAAC
GCAGCCTGGTACACCCGTTTGGAAAACTGGATTCACGCTGCGCTGGATGGAGAGCTGTCCGGCGTCGCCGAC
TGCTCCGGTGTCGCCGATCGCCGGCACTCCGGCCGAGGCATGGAGGGCGCCTCGTCTGAACCGGAGGCGGTG
GAAGCCAGTGCGGAGGATGCGCAACAGGCGGCTGAAGCGGCGAGCCAGTGA
Translation:
MFSQWVFLSVLALAVPSFAWAEDAVSDLAKEQSKAEQGDKRGDELFAEFTRLRQAAETGEPQALFDFGAYFY
QQQNYASAREWWGKAAAAGMVRAQIQLAMLYRDGDGGPQDKTEAARWFRKAAEQGDAAAQNEMGVLYWRGEG
VDQDRVKAGTWFERAAASGSEDAETNLGWFYLDDSQGVYSATSDEEAALLDRYAGSREKAFQWFCKAATQGD
ARAQFKVGEAYWNGSGAGMNKLQARLWLEKAAQQQDADAIAWLESAANAAWYTRLENWIHAALDGELSGVAD
CSGVADRRHSGRGMEGASSEPEAVEASAEDAQQAAEAASQ*
AnnotationID:2119GeneID:2111
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 18:06:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0360
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
98% identical to PA0360 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4225




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21371




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2111
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3617
                           PA0360_tr
                           translation of PA0360
                           328
                           98.47
                           99.08
                           0
                           1696.0
     

     
     
111656
                           gb|AAG03749.1|AE004474_1
                           (AE004474) hypothetical protein PA0360 [Pseudomonas aeruginosa PAO1]
                           328
                           98.47
                           99.08
                           0
                           1696.0
     

     
     
111657
                           gb|AAN79743.1|AE016759_17
                           (AE016759) Hypothetical protein [Escherichia coli CFT073]
                           405
                           25.67
                           38.76
                           104
                           360.0
     

     






      

          
GC ORFID: 45113How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0360Glimmer Score: 

          
Start: 6218798Stop: 6219784

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0360 translation of PA0360Homolog Bit Score 657.0

          
Other Homologs:  t_PA0360 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAGTCAGTGGGTGTTCCTGTCCGTCCTTGCTCTTGCCGTACCCTCGTTCGCCTGGGCGGAGGATGCG 
GTGTCCGACCTCGCCAAGGAGCAGTCCAAGGCCGAGCAGGGCGACAAGCGCGGCGATGAACTGTTCGCCGAA 
TTCACCCGCCTCCGCCAGGCCGCCGAGACGGGGGAGCCGCAGGCTCTGTTCGATTTCGGCGCCTACTTCTAC 
CAGCAACAGAACTACGCCAGCGCGCGCGAATGGTGGGGCAAGGCGGCCGCTGCGGGGATGGTCCGCGCGCAG 
ATCCAACTGGCCATGCTCTATCGCGATGGTGACGGCGGGCCACAGGACAAGACCGAGGCGGCACGCTGGTTC 
CGGAAGGCCGCGGAGCAGGGGGATGCCGCCGCCCAGAATGAAATGGGCGTTCTCTACTGGAGAGGCGAAGGG 
GTCGACCAGGACCGGGTGAAGGCCGGGACCTGGTTCGAACGTGCGGCGGCCAGCGGTAGCGAAGACGCCGAA 
ACCAATCTGGGATGGTTCTACCTGGACGACTCGCAAGGCGTCTATTCCGCCACTTCAGACGAGGAAGCCGCC 
CTGCTGGACCGTTATGCCGGCAGCCGGGAAAAGGCCTTCCAGTGGTTCTGCAAGGCTGCGACCCAGGGAGAT 
GCCCGTGCCCAGTTCAAGGTGGGCGAGGCCTACTGGAACGGTTCCGGTGCCGGGATGAACAAGCTGCAAGCA 
CGGCTCTGGCTGGAAAAGGCCGCACAGCAGCAGGATGCGGATGCCATCGCCTGGCTGGAGAGCGCCGCGAAC 
GCAGCCTGGTACACCCGTTTGGAAAACTGGATTCACGCTGCGCTGGATGGAGAGCTGTCCGGCGTCGCCGAC 
TGCTCCGGTGTCGCCGATCGCCGGCACTCCGGCCGAGGCATGGAGGGCGCCTCGTCTGAACCGGAGGCGGTG 
GAAGCCAGTGCGGAGGATGCGCAACAGGCGGCTGAAGCGGCGAGCCAGTGA