ViewGene

Locus Name:
GeneID:
Location:

GeneID:2110
TrivialName: PA14_61220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61220
PAO1 Ortholog Locus:PA4627
Sequence Length:999
Protein Length:332
Start: 5466256
Stop: 5467254
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08015.1|AE004877_2 (AE004877) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 330/332 (99%), Positives = 331/332 (99%)
Sequence:
ATGGACCCTCGCAGTGAAGTGCTGCTGCGCCAGCGCCACCTCTTCGCGACCCCGCTGCTGCTGGCCGGCCTG
CCCGCCGACGACCTGCTCGCCGAGCTACCGCAGGCCCAGGGCTGGAGCTGGCACGCCGGCGAGCAGGCGCAG
CTGGACGCCCGCTTCCCCGACCGTAGCCGTTTCGACACGCGCGCGCCGACCGGCGCCTGGACTTCGGCCGTT
CTGTTCCTGCCCAAGTCCCGCGAACTGACCGACTACCTGCTGGCCAGCCTGGCCGCCCGCCTGCCCGGCGGC
GAACTCTTCCTGGTCGGCGAAAAGCGCGGCGGGATCGAGCGCGCGAGCAAGCAGTTGGCCGCCTACGGCAAG
CCCCGCAAACTGGATAGCGCGCGGCATTGCCAGCTCTGGCAGGTGCGTATCGAACAGGCGCCGGCCGAGCCC
GACCTGCACGCCCTGGCCCAGCGCTACAGCCTGCCGCTGGCCGATGGCGAGCTGCAGGTGGTGAGCCTGCCG
GGGGTGTTCAGCCATGGCCGCCTGGATCGCGGCAGCGCGCTGCTGCTGGGGCAACTGCAAGCCCTGCCCGGC
GGCCATCTGCTGGACTTCGGCTGCGGTGCCGGCGTACTCGGGGCGGTCCTCAAGCGTCGCTACCCCGCCAGT
CGCCTGACTCTGCTCGACGTCGACGCCTTCGCTGTCGAGAGCAGCCGACTGACCCTCGCCGCCAACGGCCTG
GACGGCGAAGTGATCGCCGCCGACGGCATCGACGGCGCGCCGCGCGAACTCGCCGCGATCGTCAGCAACCCG
CCCTTCCACCAGGGCGTGCACACCGACTACCAGGCCTCCGAGCGCCTGCTGCAACGCGCCGCCGAGCACCTG
GCGCCGGGCGGCGAACTGCGCCTGGTCGCCAACAGCTTCCTGAAGTACCCGCCGTTGATCGAACGCCACCTC
GGCCCCTGCCGGACACTCGCCGAAGGCGACGGTTTCCGCATCTACTCCGCCCGTCGCTCCTGA
Translation:
MDPRSEVLLRQRHLFATPLLLAGLPADDLLAELPQAQGWSWHAGEQAQLDARFPDRSRFDTRAPTGAWTSAV
LFLPKSRELTDYLLASLAARLPGGELFLVGEKRGGIERASKQLAAYGKPRKLDSARHCQLWQVRIEQAPAEP
DLHALAQRYSLPLADGELQVVSLPGVFSHGRLDRGSALLLGQLQALPGGHLLDFGCGAGVLGAVLKRRYPAS
RLTLLDVDAFAVESSRLTLAANGLDGEVIAADGIDGAPRELAAIVSNPPFHQGVHTDYQASERLLQRAAEHL
APGGELRLVANSFLKYPPLIERHLGPCRTLAEGDGFRIYSARRS*
AnnotationID:2118GeneID:2110
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 13:01:31
Gene Name:
Confidence Code:3
GeneProduct:putative ribosomal RNA small subunit methyltransferase C
Cell Localization:()
Synonyms:rsmC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative 16S rRNA m2G1207 methylase
Functional Category Confidence Code:5
COGs:COG2813
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO10092.1|AE016802_135 (AE016802) 16S RNA G1207 methylase RsmC [Vibrio vulnificus CMCP6]
          Length = 340

 Score =  217 bits (552), Expect = 9e-56
 Identities = 118/261 (45%), Positives = 163/261 (62%), Gaps = 2/261 (0%)

>dbj|BAC60740.1| (AP005081) putative 16S rRNA m2G 1207 methyltransferase [Vibrio
           parahaemolyticus]
          Length = 341

 Score =  210 bits (534), Expect = 1e-53
 Identities = 115/262 (43%), Positives = 156/262 (59%), Gaps = 2/262 (0%)
Structural Features:
COG2813, RsmC, 16S RNA G1207 methylase RsmC 
[Translation, ribosomal structure and biogenesis]
CD-Length = 300 residues,  98.0% aligned
Score =  286 bits (733), Expect = 3e-78
Identities = 119/299 (39%), Positives = 162/299 (54%), Gaps = 7/299 (2%)
Genomic Context:
Comment:
ReferenceID:4223
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21369
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33288
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2110_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2110

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3616 PA4627_tr translation of PA4627 332 99.39 99.69 0 1696.0
111641 gb|AAG08015.1|AE004877_2 (AE004877) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 332 99.39 99.69 0 1696.0
111642 gb|AAN66386.1|AE016266_8 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 332 71.98 81.62 0 1228.0
111643 gb|AAO54675.1| (AE016859) ribosomal RNA small subunit methyltransferase C [Pseudomonas syringae pv. tomato str. DC3000] 332 66.86 78.61 0 1153.0
111644 gb|AAF93789.1| (AE004148) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] 343 40.23 55.10 14 573.0
GC ORFID: 45112How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4627Glimmer Score:
Start: 4729936Stop: 4730934
Length: 999
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4627 translation of PA4627Homolog Bit Score 657.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5060 (ORF: BLASTX 447.0), t_PA4627 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCCTCGCAGTGAAGTGCTGCTGCGCCAGCGCCACCTCTTCGCGACCCCGCTGCTGCTGGCCGGCCTG
CCCGCCGACGACCTGCTCGCCGAGCTACCGCAGGCCCAGGGCTGGAGCTGGCACGCCGGCGAGCAGGCGCAG
CTGGACGCCCGCTTCCCCGACCGTAGCCGTTTCGACACGCGCGCGCCGACCGGCGCCTGGACTTCGGCCGTT
CTGTTCCTGCCCAAGTCCCGCGAACTGACCGACTACCTGCTGGCCAGCCTGGCCGCCCGCCTGCCCGGCGGC
GAACTCTTCCTGGTCGGCGAAAAGCGCGGCGGGATCGAGCGCGCGAGCAAGCAGTTGGCCGCCTACGGCAAG
CCCCGCAAACTGGATAGCGCGCGGCATTGCCAGCTCTGGCAGGTGCGTATCGAACAGGCGCCGGCCGAGCCC
GACCTGCACGCCCTGGCCCAGCGCTACAGCCTGCCGCTGGCCGATGGCGAGCTGCAGGTGGTGAGCCTGCCG
GGGGTGTTCAGCCATGGCCGCCTGGATCGCGGCAGCGCGCTGCTGCTGGGGCAACTGCAAGCCCTGCCCGGC
GGCCATCTGCTGGACTTCGGCTGCGGTGCCGGCGTACTCGGGGCGGTCCTCAAGCGTCGCTACCCCGCCAGT
CGCCTGACTCTGCTCGACGTCGACGCCTTCGCTGTCGAGAGCAGCCGACTGACCCTCGCCGCCAACGGCCTG
GACGGCGAAGTGATCGCCGCCGACGGCATCGACGGCGCGCCGCGCGAACTCGCCGCGATCGTCAGCAACCCG
CCCTTCCACCAGGGCGTGCACACCGACTACCAGGCCTCCGAGCGCCTGCTGCAACGCGCCGCCGAGCACCTG
GCGCCGGGCGGCGAACTGCGCCTGGTCGCCAACAGCTTCCTGAAGTACCCGCCGTTGATCGAACGCCACCTC
GGCCCCTGCCGGACACTCGCCGAAGGCGACGGTTTCCGCATCTACTCCGCCCGTCGCTCCTGA