ViewGene
Locus Name:
GeneID:
Location:

GeneID:211
TrivialName: PA14_13340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13340
PAO1 Ortholog Locus:PA3909
Sequence Length:2343
Protein Length:780
Start: 1146258
Stop: 1148600
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07296.1|AE004808_6 (AE004808) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 774/780 (99%), Positives = 774/780 (99%), Gaps = 1/780 (0%)
Sequence:
ATGCACCTCTTGCGTAACGCCGCCCTGCTGGGCGGCCTGGCCCTGCTGGGCCTGCCGGTGGCCAACGCCGCC
GAGCTGATCATCTCCGAGTATGTCGAAGGCAGCGGCAACAACAAGGCGCTGGAGTTCTACAACAGCGGCAGC
CAGGTCCTCGACCTCTCCGCCTACCGCGTCGAGTTCTATTTCAACGGCGCCAGCGCGGCGGGCCGCAGCATC
GACCTGAGCGGCAGCCTGGCGCCGGGCAAGACCTTCGTCCTCGCCAACGGCGTGGCCGACCCGGCGTTGCTG
GCGCTGGCCAGCCAGCGGGTGGAGGGCAGCTGGTTCAATGGCAACGATGCGGTGCTGCTGCGCCGGCGCAGC
GGCGAGATCCTCGACAGCCTCGGCCAGGTCGGCTTCAACCCCGGCACGACCTGGGGCAGCGGCGATGTGCAG
ACCCTCGACCGGAGCCTGGTGCGCAAGGCCGACATCCGCGACGGCGACAGCGATCCCAGCGACGCCTTCGAC
CCGGCGGCGCAATGGCTGGGCTACCCGCGCGACACCTTCGCCAACCTCGGCCAGCATGGCGCTGGTGAGCCC
GGCGGCGGCGAGGAGGCCGGCCTGCGACCGATCCATGAGGTGCAGGGCGCCGGCGCCGAAAGTCCGCTGGTG
AACCAGCGGGTCGCCATCGAGGGCGTGGTGGTCGGCGACTTCCAGAACGCCAGCGAGCTGAAGGGCTTCTAC
GTGCAGCAGGAAGATGCCACGGTGGACGGCGACCCGGCGACCTCCGAAGGCATCTTCGTCTACGACGGCGGC
AACGGCAGCGACGTCAAGCTCGGCGACCGCGTCCGGGTGACCGGCCAGGTCCGCGAGTTCAACGGCCTCACC
GAACTGGTCGGGCCGCTGCAGGTCAGCGTCCTGGCGAGCGGCGTGGCCTTGCCGACGCCGGCCGGCATCAGC
CTGCCGCTGGCCAGCGCCGATGCGCTGGAGCGCTACGAAGGCATGCGCGTGCAGCTCCGCCAGACGCTGACC
GTCAACGAGGTCTACAACCTCGGCCGCTACGGCGAGGTCCTGCTGTCCTCCGGCGGCCGCCAGATGACTCCG
ACCAACGTGGTGGCTCCCGGCGAACAGGCCAAGGCCATGCAGGCGCGCAACGACCTCGACCGGATTCTCCTC
GACGACGGCCGCAGCGGGCAGAACCCCGACCCGATCCGCTACCCGGCGCCGGAACTGAGCGCCTACAACAGC
CTGCGCGTCGGCGATCGCACCAGCGCCATCGACGGCGTGCTCGACTACTCGGCCGGCAGCTACCGTATCCAG
CCGTTGCAGACGCCGACCTTCGAGGCGGCCAATCCGCGTCCGGCCCAGCCGGCGGTGGAAGGGCGCCTGCGG
GTGGCCAGCTTCAACGTGCTCAACTACTTCAACGGCGATGGCAAGGGCGGCGGTTTCCCCACCTCGCGCGGA
GCCAACACGGCCGAGGAGTTCCAGCGGCAGAAAGCGAAGATCGTCGCGGCGATCCTCGCCTCGAAGGCGGAC
ATCGTCGGCCTGATGGAGATCGAGAACGACGGCTACGGCGAGTTCAGTGCCATCGCCGACCTGGTCAACGGC
CTCAACGCCAGCCTGCCCCAGGGCCAGCGCTATGCCTTCGTCAACCCGAACCGGGCGAAGCTGGGCAGCGAC
GAGATTGCCGTGGGGCTGATCTATCGCGGCGACAAGGTCCGCATCTATCGATCCGCGGCGGTGCTCGACAGT
TCGGTGAACCCGGAGTTCGACGACACCCGCAACCGTCCGACCCTGGCCCAGACCTTCCAGGAGATCAATGGC
GGCGAACGCCTGACCATCGCGGTGAACCACCTGAAGTCGAAGGGCTCGGCCTGCGACGGTGACCCGGACACC
GGCGACGGCCAGGGCAACTGCAACCTGACCCGGGCGCGCGCCGCCCAGGCCCTGGTGGACTGGCTGGCGGGC
GATCCGACGGGCGCCAAGGAACCTGACCGCCTGATCATCGGCGACCTCAATTCCTATGCCAAGGAAGACCCG
GTGAACGTCATCCGCGGCGCCGGCTACACCGACCTGGTGGCGCGTCAGGCGGGCGCAGGAAAGGGCTACTCC
TACGTGTTCTCCGGGCAGTCCGGCTACCTCGACCACGCCCTCGCCAACGCCAGCCTGGCGCGCCAGGTACGC
GGCGCGGTGGAGTGGCACATCAACGCCGACGAGCCCCGGGTGCTGGACTACAACGTCGAGTTCAAGACCCCT
CGGCAGCAGGACAGCCTGTACAACGCCGAGCCGTACCGGGCCTCCGACCACGACCCGGTGGTGATCGGTATC
GACCTGCGCCGGGTGGCGATGAAGAAGCACCGCAGGTAG
Translation:
MHLLRNAALLGGLALLGLPVANAAELIISEYVEGSGNNKALEFYNSGSQVLDLSAYRVEFYFNGASAAGRSI
DLSGSLAPGKTFVLANGVADPALLALASQRVEGSWFNGNDAVLLRRRSGEILDSLGQVGFNPGTTWGSGDVQ
TLDRSLVRKADIRDGDSDPSDAFDPAAQWLGYPRDTFANLGQHGAGEPGGGEEAGLRPIHEVQGAGAESPLV
NQRVAIEGVVVGDFQNASELKGFYVQQEDATVDGDPATSEGIFVYDGGNGSDVKLGDRVRVTGQVREFNGLT
ELVGPLQVSVLASGVALPTPAGISLPLASADALERYEGMRVQLRQTLTVNEVYNLGRYGEVLLSSGGRQMTP
TNVVAPGEQAKAMQARNDLDRILLDDGRSGQNPDPIRYPAPELSAYNSLRVGDRTSAIDGVLDYSAGSYRIQ
PLQTPTFEAANPRPAQPAVEGRLRVASFNVLNYFNGDGKGGGFPTSRGANTAEEFQRQKAKIVAAILASKAD
IVGLMEIENDGYGEFSAIADLVNGLNASLPQGQRYAFVNPNRAKLGSDEIAVGLIYRGDKVRIYRSAAVLDS
SVNPEFDDTRNRPTLAQTFQEINGGERLTIAVNHLKSKGSACDGDPDTGDGQGNCNLTRARAAQALVDWLAG
DPTGAKEPDRLIIGDLNSYAKEDPVNVIRGAGYTDLVARQAGAGKGYSYVFSGQSGYLDHALANASLARQVR
GAVEWHINADEPRVLDYNVEFKTPRQQDSLYNAEPYRASDHDPVVIGIDLRRVAMKKHRR*
AnnotationID:221GeneID:211
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:28
Gene Name:
Confidence Code:3
GeneProduct:predicted extracellular nuclease
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2374,pfam03372
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17093




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:211_CDD.html


    		




 
URL:

















    ReferenceID:17567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:211
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
362
                           PA3909_tr
                           translation of PA3909
                           780
                           99.23
                           99.23
                           1
                           3957.0
     

     
     
21980
                           gb|AAG07296.1|AE004808_6
                           (AE004808) hypothetical protein PA3909 [Pseudomonas aeruginosa PAO1]
                           780
                           99.23
                           99.23
                           1
                           3957.0
     

     
     
21981
                           gb|AAN54896.1|AE015627_14
                           (AE015627) extracellular nuclease, putative [Shewanella oneidensis MR-1]
                           973
                           41.41
                           53.75
                           218
                           1872.0
     

     
     
21983
                           gb|AAQ61456.1|
                           (AE016923) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           827
                           35.67
                           46.07
                           237
                           1267.0
     

     
     
21984
                           dbj|BAC92018.1|
                           (AP006582) gll4077 [Gloeobacter violaceus PCC 7421]
                           806
                           33.00
                           45.03
                           226
                           1058.0
     

     






      

          
GC ORFID: 43213How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3909Glimmer Score: 

          
Start: 3807680Stop: 3805338

          
Length: 2343


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3909 translation of PA3909Homolog Bit Score 1528.0

          
Other Homologs:  t_PA3909 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCTCTTGCGTAACGCCGCCCTGCTGGGCGGCCTGGCCCTGCTGGGCCTGCCGGTGGCCAACGCCGCC 
GAGCTGATCATCTCCGAGTATGTCGAAGGCAGCGGCAACAACAAGGCGCTGGAGTTCTACAACAGCGGCAGC 
CAGGTCCTCGACCTCTCCGCCTACCGCGTCGAGTTCTATTTCAACGGCGCCAGCGCGGCGGGCCGCAGCATC 
GACCTGAGCGGCAGCCTGGCGCCGGGCAAGACCTTCGTCCTCGCCAACGGCGTGGCCGACCCGGCGTTGCTG 
GCGCTGGCCAGCCAGCGGGTGGAGGGCAGCTGGTTCAATGGCAACGATGCGGTGCTGCTGCGCCGGCGCAGC 
GGCGAGATCCTCGACAGCCTCGGCCAGGTCGGCTTCAACCCCGGCACGACCTGGGGCAGCGGCGATGTGCAG 
ACCCTCGACCGGAGCCTGGTGCGCAAGGCCGACATCCGCGACGGCGACAGCGATCCCAGCGACGCCTTCGAC 
CCGGCGGCGCAATGGCTGGGCTACCCGCGCGACACCTTCGCCAACCTCGGCCAGCATGGCGCTGGTGAGCCC 
GGCGGCGGCGAGGAGGCCGGCCTGCGACCGATCCATGAGGTGCAGGGCGCCGGCGCCGAAAGTCCGCTGGTG 
AACCAGCGGGTCGCCATCGAGGGCGTGGTGGTCGGCGACTTCCAGAACGCCAGCGAGCTGAAGGGCTTCTAC 
GTGCAGCAGGAAGATGCCACGGTGGACGGCGACCCGGCGACCTCCGAAGGCATCTTCGTCTACGACGGCGGC 
AACGGCAGCGACGTCAAGCTCGGCGACCGCGTCCGGGTGACCGGCCAGGTCCGCGAGTTCAACGGCCTCACC 
GAACTGGTCGGGCCGCTGCAGGTCAGCGTCCTGGCGAGCGGCGTGGCCTTGCCGACGCCGGCCGGCATCAGC 
CTGCCGCTGGCCAGCGCCGATGCGCTGGAGCGCTACGAAGGCATGCGCGTGCAGCTCCGCCAGACGCTGACC 
GTCAACGAGGTCTACAACCTCGGCCGCTACGGCGAGGTCCTGCTGTCCTCCGGCGGCCGCCAGATGACTCCG 
ACCAACGTGGTGGCTCCCGGCGAACAGGCCAAGGCCATGCAGGCGCGCAACGACCTCGACCGGATTCTCCTC 
GACGACGGCCGCAGCGGGCAGAACCCCGACCCGATCCGCTACCCGGCGCCGGAACTGAGCGCCTACAACAGC 
CTGCGCGTCGGCGATCGCACCAGCGCCATCGACGGCGTGCTCGACTACTCGGCCGGCAGCTACCGTATCCAG 
CCGTTGCAGACGCCGACCTTCGAGGCGGCCAATCCGCGTCCGGCCCAGCCGGCGGTGGAAGGGCGCCTGCGG 
GTGGCCAGCTTCAACGTGCTCAACTACTTCAACGGCGATGGCAAGGGCGGCGGTTTCCCCACCTCGCGCGGA 
GCCAACACGGCCGAGGAGTTCCAGCGGCAGAAAGCGAAGATCGTCGCGGCGATCCTCGCCTCGAAGGCGGAC 
ATCGTCGGCCTGATGGAGATCGAGAACGACGGCTACGGCGAGTTCAGTGCCATCGCCGACCTGGTCAACGGC 
CTCAACGCCAGCCTGCCCCAGGGCCAGCGCTATGCCTTCGTCAACCCGAACCGGGCGAAGCTGGGCAGCGAC 
GAGATTGCCGTGGGGCTGATCTATCGCGGCGACAAGGTCCGCATCTATCGATCCGCGGCGGTGCTCGACAGT 
TCGGTGAACCCGGAGTTCGACGACACCCGCAACCGTCCGACCCTGGCCCAGACCTTCCAGGAGATCAATGGC 
GGCGAACGCCTGACCATCGCGGTGAACCACCTGAAGTCGAAGGGCTCGGCCTGCGACGGTGACCCGGACACC 
GGCGACGGCCAGGGCAACTGCAACCTGACCCGGGCGCGCGCCGCCCAGGCCCTGGTGGACTGGCTGGCGGGC 
GATCCGACGGGCGCCAAGGAACCTGACCGCCTGATCATCGGCGACCTCAATTCCTATGCCAAGGAAGACCCG 
GTGAACGTCATCCGCGGCGCCGGCTACACCGACCTGGTGGCGCGTCAGGCGGGCGCAGGAAAGGGCTACTCC 
TACGTGTTCTCCGGGCAGTCCGGCTACCTCGACCACGCCCTCGCCAACGCCAGCCTGGCGCGCCAGGTACGC 
GGCGCGGTGGAGTGGCACATCAACGCCGACGAGCCCCGGGTGCTGGACTACAACGTCGAGTTCAAGACCCCT 
CGGCAGCAGGACAGCCTGTACAACGCCGAGCCGTACCGGGCCTCCGACCACGACCCGGTGGTGATCGGTATC 
GACCTGCGCCGGGTGGCGATGAAGAAGCACCGCAGGTAG