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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07010.1|AE004782_8 (AE004782) sigma factor RpoS [Pseudomonas aeruginosa PAO1]
Identities = 334/334 (100%), Positives = 334/334 (100%)
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Sequence:
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATG
CTGGACGAGTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCC
AAACAACACAAGCACATCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTC
TCGCCCCTGTTGACGCCCGAAGAGGAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGG
AAGCGGATGATCGAGAGCAACCTGCGGTTGGTGGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCC
CTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCCGCGCCGTGGAGAAGTTCGATCCGGAGCGCGGA
TTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAACGGGCCATCATGAACCAGACCCGG
ACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGCGCGGGAACTGACCCAC
AAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGGTCAAGCGC
ATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATC
GACCAGTGGCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCAC
GAAAGCAGCACGCTGGAAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTC
GAGGCGCTGAAGCGCCTGCGGGAGATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA |
Translation:
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGF
SPLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERG
FRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKR
MLGLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGH
ESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNGLSSDALFQ* |
AnnotationID:2116 | GeneID:2108 |
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Modification Date/Time: |
2005-04-20 18:06:24 |
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GeneProduct: | sigma factor RpoS |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | RNA polymerase principal sigma factor |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO55085.1| (AE016861) RNA polymerase sigma-38 factor [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 335
Score = 578 bits (1490), Expect = e-164
Identities = 297/335 (88%), Positives = 314/335 (93%), Gaps = 1/335 (0%)
>gb|AAK29754.1| (AY029155) stationary phase sigma factor RpoS [Azotobacter
vinelandii]
Length = 238
Score = 447 bits (1149), Expect = e-125
Identities = 225/238 (94%), Positives = 231/238 (97%)
>gb|AAG53883.1|AF275947_2 (AF275947) sigma factor RpoS [Escherichia coli]
Length = 366
Score = 416 bits (1069), Expect = e-115
Identities = 219/329 (66%), Positives = 255/329 (77%), Gaps = 12/329 (3%) |
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Structural Features: | COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Transcription]
CD-Length = 342 residues, 97.7% aligned
Score = 292 bits (748), Expect = 9e-80
Identities = 139/334 (41%), Positives = 195/334 (58%), Gaps = 11/334 (3%) |
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