ViewGene
Locus Name:
GeneID:
Location:

GeneID:2107
TrivialName: PA14_22890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22890
PAO1 Ortholog Locus:PA3195
Sequence Length:1005
Protein Length:334
Start: 1986519
Stop: 1985515
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06583.1|AE004743_6 (AE004743) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 332/334 (99%), Positives = 333/334 (99%)
Sequence:
ATGACTATCCGCCTGGCCATCAACGGCTTCGGTCGCATCGGCCGAAACGTTCTTCGCGCCCTGTATACCGGC
CACTACCGCGAACAGTTGCAGGTAGTGGCGATCAATGACCTCGGCGACGCCGCGGTCAACGCCCACCTGTTC
CAGTACGACAGCGTCCATGGACGCTTTCCCGGCGAGGTCGAGCACGATGCCGAAAGCCTGCGGGTGATGGGC
GACCGCATCGCCGTCAGCGCCATCCGCAACCCGGCGGAACTGCCCTGGAAGAGCCTCGGCGTGGACATCGTG
CTCGAGTGCACGGGGCTCTTCACCAGCCGCGACAAAGCCGCCGCCCACCTGCAGGCCGGCGCCGGCAAGGTG
CTGATCTCGGCGCCCGGCAAGGACGTCGACGCCACCGTGGTCTACGGCGTCAACCACGAGGTGCTGCGCGCC
TCCCATCGGATCGTCTCGAACGCCTCCTGCACCACCAACTGCCTGGCACCGGTGGCCCAGGTGCTGCATCGC
GAGCTGGGCATCGAGCACGGCCTGATGACCACCATCCATGCCTACACCAACGACCAGAACCTCTCCGACGTG
TACCACCCGGACCTGTACCGCGCACGTTCGGCGACCCAGTCGATGATCCCCACCAAGACCGGCGCCGCCGAG
GCGGTCGGCCTGGTCCTGCCGGAACTCGCCGGCAAGCTTACCGGCCTGGCGGTGCGGGTGCCGGTGATCAAC
GTGTCGCTGGTCGATCTCACCGTGCAGGTGGCCCGGGATACCAGCGTAGACGAGGTCAACCGCCTGCTGCGC
GAGGCCAGCGAGGGCTCTCCGGTGCTCGGCTACAACACCCAGCCGCTGGTGTCGGTGGATTTCAACCACGAC
CCGCGCTCGTCGATCTTCGACGCCAACCACACCAAGGTCAGCGGCCGGCTGGTCAAGGCGATGGCCTGGTAC
GACAACGAGTGGGGCTTCTCCAACCGCATGCTGGACAGCGCCCTGGCGCTGGCCGCCGCCCGCGACTGA
Translation:
MTIRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGRFPGEVEHDAESLRVMG
DRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVDATVVYGVNHEVLRA
SHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQNLSDVYHPDLYRARSATQSMIPTKTGAAE
AVGLVLPELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGSPVLGYNTQPLVSVDFNHD
PRSSIFDANHTKVSGRLVKAMAWYDNEWGFSNRMLDSALALAAARD*
AnnotationID:2115GeneID:2107
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:41
Gene Name:gapA
Confidence Code:1
GeneProduct:glyceraldehyde-3-phosphate dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:erythrose-4-phosphate dehydrogenase
Functional Category Confidence Code:5
COGs:COG0057,pfam02800,pfam00044
Secondary Functional Category(ies):energy metabolism
EC Number:1.2.1.12
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54811.1| (AE016860) glyceraldehyde 3-phosphate dehydrogenase, type I
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 333

 Score =  519 bits (1337), Expect = e-147
 Identities = 257/329 (78%), Positives = 290/329 (88%)

>gb|AAN66634.1|AE016291_3 (AE016777) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas
           putida KT2440]
          Length = 333

 Score =  518 bits (1333), Expect = e-146
 Identities = 255/332 (76%), Positives = 288/332 (86%)

>emb|CAE36466.1| (BX640426) glyceraldehyde-3-phosphate dehydrogenase [Bordetella
           parapertussis]
          Length = 336

 Score =  454 bits (1167), Expect = e-127
 Identities = 225/336 (66%), Positives = 271/336 (80%), Gaps = 3/336 (0%)






 
Structural Features:
COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase /
erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism]
CD-Length = 335 residues,  99.7% aligned
Score =  456 bits (1176), Expect = 1e-129
Identities = 211/337 (62%), Positives = 247/337 (73%), Gaps = 7/337 (2%)

pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain. 
CD-Length = 162 residues, 100.0% aligned
Score =  220 bits (563), Expect = 2e-58
Identities = 97/162 (59%), Positives = 119/162 (73%), Gaps = 4/162 (2%)

pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.
CD-Length = 151 residues, 100.0% aligned
Score =  212 bits (541), Expect = 5e-56
Identities = 92/155 (59%), Positives = 110/155 (70%), Gaps = 6/155 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21363




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32348




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2107_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2107
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3611
                           PA3195_tr
                           translation of PA3195
                           334
                           99.40
                           99.70
                           0
                           1695.0
     

     
     
110679
                           gb|AAG06583.1|AE004743_6
                           (AE004743) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           334
                           99.40
                           99.70
                           0
                           1695.0
     

     
     
110680
                           gb|AAA03488.1|
                           (M74256) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas aeruginosa]
                           335
                           98.20
                           99.10
                           1
                           1673.0
     

     
     
110681
                           gb|AAO54811.1|
                           (AE016860) glyceraldehyde 3-phosphate dehydrogenase, type I [Pseudomonas syringae pv. tomato str. DC3000]
                           334
                           77.24
                           87.12
                           1
                           1337.0
     

     
     
110682
                           gb|AAN66634.1|AE016291_3
                           (AE016777) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas putida KT2440]
                           334
                           76.34
                           86.22
                           1
                           1331.0
     

     






      

          
GC ORFID: 45109How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3195Glimmer Score: 

          
Start: 2967412Stop: 2968416

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3195 translation of PA3195Homolog Bit Score 657.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4954 (ORF: BLASTX 519.0), t_PA0551 (ORF: BLASTX 325.0), psyr_15may02_Scaffold6_revised_gene6572 (ORF: BLASTX 312.0), t_PA3195 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTATCCGCCTGGCCATCAACGGCTTCGGTCGCATCGGCCGAAACGTTCTTCGCGCCCTGTATACCGGC 
CACTACCGCGAACAGTTGCAGGTAGTGGCGATCAATGACCTCGGCGACGCCGCGGTCAACGCCCACCTGTTC 
CAGTACGACAGCGTCCATGGACGCTTTCCCGGCGAGGTCGAGCACGATGCCGAAAGCCTGCGGGTGATGGGC 
GACCGCATCGCCGTCAGCGCCATCCGCAACCCGGCGGAACTGCCCTGGAAGAGCCTCGGCGTGGACATCGTG 
CTCGAGTGCACGGGGCTCTTCACCAGCCGCGACAAAGCCGCCGCCCACCTGCAGGCCGGCGCCGGCAAGGTG 
CTGATCTCGGCGCCCGGCAAGGACGTCGACGCCACCGTGGTCTACGGCGTCAACCACGAGGTGCTGCGCGCC 
TCCCATCGGATCGTCTCGAACGCCTCCTGCACCACCAACTGCCTGGCACCGGTGGCCCAGGTGCTGCATCGC 
GAGCTGGGCATCGAGCACGGCCTGATGACCACCATCCATGCCTACACCAACGACCAGAACCTCTCCGACGTG 
TACCACCCGGACCTGTACCGCGCACGTTCGGCGACCCAGTCGATGATCCCCACCAAGACCGGCGCCGCCGAG 
GCGGTCGGCCTGGTCCTGCCGGAACTCGCCGGCAAGCTTACCGGCCTGGCGGTGCGGGTGCCGGTGATCAAC 
GTGTCGCTGGTCGATCTCACCGTGCAGGTGGCCCGGGATACCAGCGTAGACGAGGTCAACCGCCTGCTGCGC 
GAGGCCAGCGAGGGCTCTCCGGTGCTCGGCTACAACACCCAGCCGCTGGTGTCGGTGGATTTCAACCACGAC 
CCGCGCTCGTCGATCTTCGACGCCAACCACACCAAGGTCAGCGGCCGGCTGGTCAAGGCGATGGCCTGGTAC 
GACAACGAGTGGGGCTTCTCCAACCGCATGCTGGACAGCGCCCTGGCGCTGGCCGCCGCCCGCGACTGA