ViewGene
Locus Name:
GeneID:
Location:

GeneID:2106
TrivialName: PA14_32520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32520
PAO1 Ortholog Locus:PA2483
Sequence Length:1002
Protein Length:333
Start: 2824795
Stop: 2825796
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05871.1|AE004676_3 (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/333 (99%), Positives = 332/333 (99%)
Sequence:
ATGACAACGCTTGCTGATATTCCCCTGTCCATGCTCGACCTGGTGCCGGTGCGCACCGGCGGCAGCGTGGCC
GAAGCCCTGCACAACTCCCTGGACCTGGCGCGCCATGTGGAGCGCCTGGGCTTCAACCGTTTCTGGCTGGCC
GAGCACCACAACATGGATGGCATCGCCAGCTCCGCCACCGCGCTGCTGATCGGCCATATCGCCGGCGGCACC
TCGCGGATCCGCGTCGGCTCGGGTGGGGTGATGCTGCCGAACCATGCGCCGCTGGTGGTGGCGGAAAACTTC
GGCACCCTGGAGACGCTCTACCCGGGCCGCATCGACCTCGGCCTTGGCCGCGCCCCGGGCGCCGACCAGGCG
ACCATGCGCGCCTTGCGTCGCGACCGCCTGGGCAACGGCGACGACTTCCCCGAGCAGGTCGCCGAGCTGGAA
ATGCTGCTCGGCCCGCGCCGTTCCCAGCAGAGCCTGCTGGCGGTGCCGGGCGAGGGTACCCAGGTGCCGATC
TGGCTACTCGGTTCGAGCCTGTTCAGCGCCCACCTGGCGGCGCAGAAAGGCTTGCCCTATGCCTTCGCTTCG
CATTTCGCACCGCGTTACCTGCACGAGGCGCTGCGCATCTACCGCAGCAACTTCCAGCCCTCGGCGGTACTC
GACAAACCTTACGCGATGATCGGCGTGCCGCTGATCGCCGCACCTACCGACGAAGAGGCCGAGTTCCTCGCC
ACTACCGCCTTCCAGCGCGTGCTGGCGCTGATCCGCGGCGAGAGCCTGAAACAGAAGCCGCCGGTGGAAAGC
ATGGCGCCGTTGTGGCTGCCCCACGAGCAGGATGCGGTCGGCAGCTTCTTCGGCCTGGCGGTGATCGGCGGT
CCGGAGAAGGTTCGCGCGCGCCTGGAGATCCTCCTGGAGCAGACCGGCGCCGACGAGCTTATCTTCACCAGC
GACTTCTACGAGCACGCCCATCGGCTGCGCTCTTGCGAAATCGTCGCGGGGCTGAAAGGGGCGTGA
Translation:
MTTLADIPLSMLDLVPVRTGGSVAEALHNSLDLARHVERLGFNRFWLAEHHNMDGIASSATALLIGHIAGGT
SRIRVGSGGVMLPNHAPLVVAENFGTLETLYPGRIDLGLGRAPGADQATMRALRRDRLGNGDDFPEQVAELE
MLLGPRRSQQSLLAVPGEGTQVPIWLLGSSLFSAHLAAQKGLPYAFASHFAPRYLHEALRIYRSNFQPSAVL
DKPYAMIGVPLIAAPTDEEAEFLATTAFQRVLALIRGESLKQKPPVESMAPLWLPHEQDAVGSFFGLAVIGG
PEKVRARLEILLEQTGADELIFTSDFYEHAHRLRSCEIVAGLKGA*
AnnotationID:2114GeneID:2106
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:40
Gene Name:
Confidence Code:3
GeneProduct:putative flavin-dependent oxidoreductase
Cell Localization:()
Synonyms:PA2483
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2141,pfam00296
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53707.1| (AE016856) bacterial luciferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 333

 Score =  483 bits (1243), Expect = e-136
 Identities = 232/328 (70%), Positives = 278/328 (84%)

>dbj|BAC46509.1| (AP005939) flavin dependant oxidoreductase [Bradyrhizobium
           japonicum USDA 110]
          Length = 335

 Score =  381 bits (979), Expect = e-105
 Identities = 189/326 (57%), Positives = 237/326 (72%)








 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  95.2% aligned
Score =  167 bits (424), Expect = 2e-42
Identities = 98/323 (30%), Positives = 130/323 (40%), Gaps = 17/323 (5%)

pfam00296, Bac_luciferase, Luciferase-like monooxygenase.
CD-Length = 323 residues,  90.4% aligned
Score =  116 bits (293), Expect = 3e-27
Identities = 84/318 (26%), Positives = 120/318 (37%), Gaps = 45/318 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21361




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33029




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2106_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3610
                           PA2483_tr
                           translation of PA2483
                           333
                           99.69
                           99.69
                           0
                           1695.0
     

     
     
110626
                           gb|AAG05871.1|AE004676_3
                           (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           333
                           99.69
                           99.69
                           0
                           1695.0
     

     
     
110627
                           gb|AAN65722.1|AE016198_9
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           334
                           70.05
                           83.53
                           1
                           1254.0
     

     
     
110628
                           gb|AAO53707.1|
                           (AE016856) bacterial luciferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           333
                           69.66
                           83.78
                           0
                           1239.0
     

     
     
110629
                           gb|AAQ60530.1|
                           (AE016920) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           343
                           60.34
                           74.05
                           10
                           1058.0
     

     






      

          
GC ORFID: 45108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2483Glimmer Score: 

          
Start: 2129129Stop: 2128128

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2483 translation of PA2483Homolog Bit Score 657.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4082 (ORF: BLASTX 481.0), t_PA2483 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAACGCTTGCTGATATTCCCCTGTCCATGCTCGACCTGGTGCCGGTGCGCACCGGCGGCAGCGTGGCC 
GAAGCCCTGCACAACTCCCTGGACCTGGCGCGCCATGTGGAGCGCCTGGGCTTCAACCGTTTCTGGCTGGCC 
GAGCACCACAACATGGATGGCATCGCCAGCTCCGCCACCGCGCTGCTGATCGGCCATATCGCCGGCGGCACC 
TCGCGGATCCGCGTCGGCTCGGGTGGGGTGATGCTGCCGAACCATGCGCCGCTGGTGGTGGCGGAAAACTTC 
GGCACCCTGGAGACGCTCTACCCGGGCCGCATCGACCTCGGCCTTGGCCGCGCCCCGGGCGCCGACCAGGCG 
ACCATGCGCGCCTTGCGTCGCGACCGCCTGGGCAACGGCGACGACTTCCCCGAGCAGGTCGCCGAGCTGGAA 
ATGCTGCTCGGCCCGCGCCGTTCCCAGCAGAGCCTGCTGGCGGTGCCGGGCGAGGGTACCCAGGTGCCGATC 
TGGCTACTCGGTTCGAGCCTGTTCAGCGCCCACCTGGCGGCGCAGAAAGGCTTGCCCTATGCCTTCGCTTCG 
CATTTCGCACCGCGTTACCTGCACGAGGCGCTGCGCATCTACCGCAGCAACTTCCAGCCCTCGGCGGTACTC 
GACAAACCTTACGCGATGATCGGCGTGCCGCTGATCGCCGCACCTACCGACGAAGAGGCCGAGTTCCTCGCC 
ACTACCGCCTTCCAGCGCGTGCTGGCGCTGATCCGCGGCGAGAGCCTGAAACAGAAGCCGCCGGTGGAAAGC 
ATGGCGCCGTTGTGGCTGCCCCACGAGCAGGATGCGGTCGGCAGCTTCTTCGGCCTGGCGGTGATCGGCGGT 
CCGGAGAAGGTTCGCGCGCGCCTGGAGATCCTCCTGGAGCAGACCGGCGCCGACGAGCTTATCTTCACCAGC 
GACTTCTACGAGCACGCCCATCGGCTGCGCTCTTGCGAAATCGTCGCGGGGCTGAAAGGGGCGTGA